pnpt1 (pnpt1,LOC106607983)


Basic Information

Item Value
gene id pnpt1
gene name pnpt1,LOC106607983
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11597278 ~ 11611851 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681878.1
GTTTACTGTCACGTGATTAATGGCTGCCCCCTGAgcctgtgtgttcatgtgtcaTACAGAACATACAGCCCGGTTTCTCCCTGACCATGAGGCTTCTTCTTCGGCTGGGTGTTTCTGCGGCCCGGCTGAACGCGCGGTTCTGTCACCGGAGCGTGTGGGCGAGCCACGGCACTGAGAGGCGGGCTGCGGTGGATTTAGGGGAGGGAAGaaAACTTCAAATATCATCTGGGAAGCTTGCCAGATTTGCTGATGGATGTTCTGTTGTTCAGCTGGGAGAGACATCAGTGATGGTCACAGCTGTCAGCAAGACAAAACCATCACCGTCCCAATTTATGCCCCTTGTGGTTGATTACAGGCAGAAAGCAGCAGCTGCTGGAAGAATTCCCACAAACTACTTGCGGAGAGAACTGGGCACAACTGACTTTGAAATCCTCACCAGCAGGCTAATAGACCGCTCCATCAGACCTCTCTTTCCTGCGGGTTACTTCTATGATACACAGGTTTTGTGCAACATATTGGCTGTTGATGGTGTCAATGACCCAGATGTGCTTGCAATCAATGGAGCATCCGCTGCCCTCGCCCTCTCTGACATTCCTTGGAATGGGCCTATTGGTGCAGTGCGCATTGGTCTTGTAGGTGAAGAGTTTATTGTAAATCCGACTCGGAGGGAAATGAGCTCCAGTAAACTGAACCTGGTGATTGCAGGAGCTCCTTGCAGCCAAGtggTGATGATGGAGGCTGCTGCAGAGAATATACTGCAACAGGACTTCTGTCATGCTGTGAAGCTGGGAGTGAAACACACCCAGCAGATCATTCATGCCATCCAGCAGCTGGCCAGAGAGCAGAAGGTGGTGAAGCGCACACCGTCCAGACTCTTCACCGCACCCCCCGAGATGGTGGAACATGCTCGACAGCTGGCCAGTAAAAGAGTCTATGCTGTCTTTACAGACTTTTCACATGACAAGGTTTCCAGAGATGAAGCCATAAACAAAGTACGACTTGACACAGAGGAAAAAATTAAAGAGAAGTTCCCTCAAGCAGAGTCTTATGAAGTAATCGAGTCCTTCGACACAGTGTCTAAAGAGGTCTTCCGTAACCTAATACTTAACGAATATAAAAGGTGTGATGGAAGAGACCTGACGTCTTTAAGAGATATTTCATGTGAAGTGGACATATTTAAGCCACTGCATGGCTCTGCACTGTTTCAGAGGGGTCAAACCCAGGTGCTTTGCAGTGTAACATTCGACTCCATAGAGTCCAGTGTAAAACCAGACGTCATAACCACAGCTCTGAGTGGGATTAAAGGCAAGAATTTCATGCTTCACTATGAGtttcctCCCTATGCAACAAACGAGACTGGGAAGATGGGTGGAATGAACAGAAGAGAGCTTGGTCATGGGGCTTTGGCAGAGAAAGCCTTGAGGCCGGTTATTCCTGAAGACTTTCCCTTCACGATACGAGTGACCTCAGAGGTGCTGGAGTCCAATGGGTCCTCATCTATGGCGTCTGCATGTGGGGGCAGCCTGGCTCTAATGGATGCAGGTGTCCCGATATCTTCAGCAGTGGCTGGTGTTGCTGTTGGTCTAATATCTAAGCCCAACCCTCAGAAAGTCTCTGACATTGAGGACTACAGattattaactgacattttgGGAATTGAGGATTACAATGGAGACATGGACTTTAAAATGGCTGGAACAAACAAGGGAATCACAGCTTTACAGGCTGATATTAAGATTCCAGGTCTTCCTCTAAAGATTGTAATGGAAGCTATACAGCAGGCAACAGtgGCCAAGAGAGAGATTTTGGGCATTATGAATAAAACCATTTCTAAACCAAGAGTTTCCCGGAAGGAGAATGGTCCACTTGTTGagAAAGTTCGAGTGCCTGTGACAAGACGAGCTCGCTTTGTTGGTCCTGGAGGTCATAATCTCCGTAGATTACAAGCCGAAACAGGTGTAACAATAAGCCAAGTAGATGAGGAAACCTTCTCAGTTTTCGCTCCAACACCAAACGCTATGAATGAAGCTCAGGAGTTCATCACTGAGATCTGCAAGGATGATCAAGAACAGCAGCTTGAATTTGGTGCCATATACACAGCCACCATCACAGAGTTAAGGGACATTGGTGTCATGGTGAAACTGTACCCCAACATGACTCCAGTGCTTCTTCATAACTCACAGCTGGATCATAAACGGATCAAACATCCCAGTGCTCTTGGATTAGAGGTTGGTCAACAAATTCAGGTGAAATATTTTGGACGTGACCCGACAGATGGAAGGATGAGGTTGTCTCGTAAAGTGCTTCATTCTCCTACAGCCACAGTGGTGAAGACTCTTAATGACAAACAGAGTATCACTATGGGAACAACACACGGCCTGTCTGAGACTTCCCCCTGACCTGCAGGACTGCTCAGGAGTATTAGGGGCATGTAGGGTATCAGCAATTCAGTGTATTTCTTTGTTCAGTTTCCTTCACTCAGACATTGAGAGGGGGGTTCACTCCAGCCTTCTCACATTAACGGATATAAGAGAACATGGGGAtctcatgtttttatttatgtaaccATAGTCCAGTACATTTAGATATTTCATGAGTGGGTATTGTTTTAtaggatatttttgtttatatgcacttttttaacaaataaaaaattgggAAAATAAATTTG

Function

symbol description
pnpt1 Enables 3'-5'-exoribonuclease activity; RNA binding activity; and polyribonucleotide nucleotidyltransferase activity. Involved in several processes, including RNA metabolic process; cellular response to interferon-beta; and positive regulation of cellular catabolic process. Located in cytosol and mitochondrial intermembrane space. Part of mitochondrial degradosome. Implicated in autosomal recessive nonsyndromic deafness 70 and combined oxidative phosphorylation deficiency 13.

NR:

description
PREDICTED: polyribonucleotide nucleotidyltransferase 1, mitochondrial

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic biological_process
GO:0003723 RNA binding molecular_function
GO:0000175 3'-5'-exoribonuclease activity molecular_function
GO:0004654 polyribonucleotide nucleotidyltransferase activity molecular_function

KEGG:

id description
K00962 pnp, PNPT1; polyribonucleotide nucleotidyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681878.1 True 2671 mRNA 0.46 28 11597278 11611851

Neighbor

gene id symbol gene type direction distance location
ppp4r3b ppp4r3b,smek2 coding downstream 2606 11582838 ~ 11594672 (-)
ccdc88a ccdc88a coding downstream 23135 11511180 ~ 11574143 (-)
rps27a rps27a coding downstream 165381 11429249 ~ 11431897 (-)
ston1 ston1 coding downstream 170775 11412610 ~ 11426503 (-)
mogs mogs,LOC106609973,LOC106602766 coding downstream 1089883 10498845 ~ 10507395 (-)
cfap36 cfap36 coding upstream 1805 11613656 ~ 11627474 (-)
LOC103040758 LOC108427447 coding upstream 61242 11673093 ~ 12525320 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding upstream 1095801 12707652 ~ 12760931 (-)
mpdz mpdz coding upstream 1204729 12816580 ~ 12879020 (-)
LOC103027614 LOC103027614 coding upstream 2187670 13799521 ~ 13807329 (-)
G183963 NA non-coding downstream 117889 11476636 ~ 11479389 (-)
G183960 NA non-coding downstream 129025 11467857 ~ 11468253 (-)
G183884 NA non-coding downstream 250115 11346910 ~ 11347163 (-)
G183857 NA non-coding downstream 409736 10955599 ~ 11187542 (-)
LOC111195221 NA non-coding upstream 916723 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1070644 12682495 ~ 12682697 (-)
G184150 NA non-coding upstream 1180931 12792782 ~ 12794964 (-)
G184152 NA non-coding upstream 1183393 12795244 ~ 12795519 (-)
LOC111195223 NA non-coding upstream 1194430 12806281 ~ 12812440 (-)
gtf2a1l NA other downstream 185634 11402707 ~ 11411644 (-)
G183880 NA other downstream 290457 11306289 ~ 11306821 (-)
G183585 NA other downstream 1744897 9845822 ~ 9852381 (-)
G183559 NA other downstream 1939664 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 4094849 7490075 ~ 7502429 (-)
G184051 NA other upstream 583361 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 1614482 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 1939281 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 2376958 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 2451793 14063644 ~ 14116456 (-)

Expression


Co-expression Network