fam160a1 (fam160a1)


Basic Information

Item Value
gene id fam160a1
gene name fam160a1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16119674 ~ 16141270 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682018.1
tctccctctatccctcATTCCCGCTCTCTGACTGCGAGCATTACTGAAGTGTCTTACTCACTCCTCACTTCCATCCTGTCATTtcctcacacactcctacacacacacacacgccattCCTCTCACACATGCTCACACCGCTCTCCTACAGGAAAGCTGTTCTTTTCTATCTCAGGCTGCCTCCTGCTTCTCATCTGGCTCCTTCACTCTTTCAGGATTTACACTGCTTTATTCTGCTGGATCTTATGAAGATGACCACTATCTATTTATGGAGGGATGCTTGTAGCTAATGACTGTCCTCAAACACAGGGCCTTCATGTGTTTCCATTAATCATGAGCCATGCTGTGAGGCTATAATGATGGCATCAGTGCTGGCCAATGGGATGCAGGGGGGCCCGTCTGTGGTCCTCAAGGGTGTGGACCCTGAAACATGCATGATAGTCTTCAAAAACCATTGGGCTCAGGTGGTGAAGATCCTGGAGAAGCATGACCCTTTACGCAGTGGTCTGGGAGGTCATGGCTTGGGCACTGTAGGTCACGCAGGCCTGCGATTGGGTCAGGTCCCCGGTGACGAGGCGAGCGCGGTGCAGAACTATGTGGAGCACATGCTGTTCCTGCTGATGGAGGAGGAGAGCGGCCAGAGCGGAGCCATGGGGCCCATCCTGGAGTTTGTGGTGATGGAGAACGTGATGGAGAGGCTGTTCATCTGGAGCCTCAGGAGAGAGTTCACTGATGACATGAAACTGGACCAGCTGAAGATGTACGAGATGCTGATTGGTCAGGCCAGGCAGCCGCTTCTGCACCACAAACCCATCCTGCGGCCGCTGATGATGTTGCTCTCGTCCTGCTCTGGCACAGCTGGCACAGCGactGGTACAGCGGGTACAGCGGGCACCGTGGAGGCAGAGCTGGTGCTGCTCCTGAATCAGCTGTGCTGCGTCCTGGCCAAAGATCCATCCATCCTGGAGCTGTTCTTCCACACCAGCGAGGATCAGGGGGCTGCTAACTTCCTTATCTTTTCCCTGCTGATCCCTTTTATCCACAGAGAGGGAGCTGTAGGGCAGCAGGCCAGAGACGCTCTGCTCCTCATCATGGCACTGTCTGCAGAAAACCACGTGGTGGCCAAACACATCGCTGAAAATACATACTTTTGTCCGGTGTTAGCTACTGGTCTGAGTGGTCTTTACTCATCTTTGCCCACTAAGCTGGATGTGCCCAGTGAAGACTGGCACAGTCTGAACAGAGAGGACTGGCAGCAGGTGCCCGCTCTCGTCCAGTTCCTCAACTCCCTCGAGTTCTGCAATGCAGTAATGCAGGTGGCTCATCCGTCCATCAGAGATCAGCTTGTTGGTTATATCTGCAATGGATTTCTCGTGCCTGTTCTGGCACCAGCACTGCACAAACTTACTATAGAGGAGGCCATGACCACGACAGCATATCTGGACCTTTTTCTGCGGAGTGTGACCGAACCCGCCCTGCTGCACACTTTCCTCAGCTTCATCCTCCTCCATCGCCATGACAACGTGCACATCCTGGATACGCTGGTCAGCCGCATCAACACACCCTTCCAGTTGGGGACTGTGTCTCTAGCCCTGTTCCGCACTCTGATTGGTCTTTACTGTGAGGATGTCATGCTTCAGCTCATACTCAAGTATCTGATCCCGTGTAATCACATGATGCTGAGTCAGCGGCGGGTGCTGAAGGAAAGAGACTGTTACTCCGTCTCGGCCGCCAAAATCCTGGCTCTTACTCCATCCTGCTGCTCCCCTGAGATCATCCCTCCACCTCTCAGACAACTGGACTCCATCGTCTGGTCAAAGGGCACACACTCAGGAACTATGGCAACCAGGCCGGCCTTCTCAGAAGATGACGACTCAGGCAACTCTTGCGTGATTGGTTCAGAGATCTACCTGGATGTGAGTTACCTGCACTACCTGTATGATGCCCGAAATGGCATTAGCAGCTGCATGCGGGCGTGCCGAGTTTGGTCCGCCCCTTATGACGGTGAAAACCCGCCTCCTGAGGAGTACCAGCCAAGTACGCTAGAGGAAACCAGCAGAGTTCGGTCCTCTGCTGCCCCCCGTAGGGCGACAAAAAACTCACAAGGTCAGTCTCAGGTGAACCCACAGACCCTCAGCGACCTCACGTCTCCTCTCGGGGTGGAACTGGAGTGGGACGATAGCTACGATGCGGCTCCTGTTCAAACAGAAGAAGAACCGGAAAATCACGCGCCgatcccggacgagccccctAAACACATCCAGGAATTACGCAGGACTGCAATCATGCTGGTTAAGGGCTCCTACATTGAGGAGTCCGAATTCCAAAATGACGTTATGGTCTATGACCTGGTGGCCCAAAAGGATGCTCAGGActtaaaagctaaagctaaacttaaCCATGTTACACCCAAACCTGTTGTAGAAACACCAGAAATGGTGATGAACTGTTTGGATAACCAGAATTCTGAGCCTCCAGTCTGTAATGGTTTAAACAGCTCTCTGGAGAAGCACTCCAATGAAAGGGAGGGAATCCAAGCAGTAGAGAGCAAATCTCCAGAGGGAGAAGACCTGGTCACTCAGTATGAGGAGCTGATTCGAACTCTGGTGGTAGAAGCAAGCAGTCCGACTAAATCGGACAAGGAGTTGAGGAGTCCGATAGTGCCgatggaggaagaggaggatgacaTGGACTTCAGCGTCTTCTCCGCAGAGACTCCAGATTCAGAGAAAATTCCCTCACCGTTCGGAACCAAACCTCGGAGTGCGAGCAGAAACCATTCCATACCTTTTACTGGTCCTTTCGTGAGCGTGCTGCTGTCTAGGCTGGAGAACATGCTGGAGAACTCTCTGCATGTGAACCTGCTTCTTACTGGTATTCTGGCCCAGTTAGCTGCGTATCCTCAGCCCCTGCTGCGCTCGTTCCTCCTCAACACCAACATGGTCTTCCAGCCCAGCGTCCGCTCCCTATACCAGGTTCTCGCGTCTCTGAAGAACCAGATAGAGCAGCTGGCAGCCTCAAAGAAGGATTTCCCAGAGCTCCTCACAGCGGCGCAGCAGTGCCTACTGGCCAGAGAGAGTTCACTCAGAGGTCAAGATTTGCTTCCAGGTTCAAACAGCCCTCAAGGTTCTGAACGCTTCTCTGGTTCTACTGCAGGGAGAACCCTGAATATCCCACCCGTCCAGCCCAAGATAGTGGTCCCCCGGAACCGGACAGAGGTGTACGCCACGGTCATTTTCACTGAGTTCCTGAAAGAGCTGGCAGCCATCGCACAGGAACACTCTGTCCTCTCCCACCTTCCCATGGAGGAGTAGAGCCGGGGGGCACTTTTATCTTCTTTAAACTGGATTTATTTCCTCACGTCGAGCTCTCAGCACTACTACACAAAGCAGATACCTCTTAAACCACATGGACCTTTTTTATGGTatcattttacagttttaaatgttttacgtcttttttttcagagaggATTATCACGTTTTCAAGGTTTTAAATTTTGGGAACAGTTTCAGTTCTGCTTTCATCATCAATCAAACTCCCGTCTTCAGAAGGTTTGGTGGAACAGAcgattgttgggctgtaaaggTGGGTCTTGTTACAGTCCTGGAGGCATGCGATTCTGACCCACATCGTCTGGAAACACAAAACCGGTCAACAATGCTGAAATTCCAGCTCCAGGCAAGCACCAAAGACTGAAAGACGAGAAGATCCAGCCTGGCGTCTGTGGCGACCAGAACACTGAGAATCTGTCGTCACTGTCCagagaaaaacatgtatttccaTCTATAAAATAGTGACGTTAcaggagaaaaacagcaaaaaaattctTACGTTTGAGTGGAAGAGTGAAAGTTAAGGTAGAAATAGGGCTTTGTATAGGCAAGGACTTATATGACTATATGCATCACAATACAGGTGTTATGATTCAACATATAAAGCCCTACATTACGATACTATGAGCAAGGCGATGTATTGAGATtgttatcatatttataaaatctgagtaaaaaaaaaaaa

Function

symbol description
fam160a1 Predicted to be involved in protein localization to perinuclear region of cytoplasm. Orthologous to human FHIP1A (FHF complex subunit HOOK interacting protein 1A).

NR:

description
PREDICTED: protein FAM160A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682018.1 True 4020 mRNA 0.51 14 16119674 16141270

Neighbor

gene id symbol gene type direction distance location
dctpp1 dctpp1 coding downstream 23354 16095030 ~ 16096320 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 351894 15763186 ~ 15767780 (-)
pds5a pds5a,LOC107757607 coding downstream 412134 15684816 ~ 15707540 (-)
ugdh ugdh,LOC107757604 coding downstream 460108 15645138 ~ 15659566 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 482582 15632254 ~ 15637092 (-)
rps3a rps3a,LOC107695588 coding upstream 38800 16180070 ~ 16184812 (-)
mab21l2 mab21l2 coding upstream 210304 16351574 ~ 16356009 (-)
trnaw-cca_46 NA coding upstream 435553 16576823 ~ 16576895 (-)
trnar-ucg_6 NA coding upstream 435655 16576925 ~ 16576997 (-)
trnar-ccg_7 NA coding upstream 435758 16577028 ~ 16577100 (-)
G184902 gatb non-coding downstream 21182 16097011 ~ 16098492 (-)
LOC111195239 NA non-coding downstream 26398 15992016 ~ 16093276 (-)
G184898 NA non-coding downstream 105148 16014017 ~ 16014526 (-)
LOC111195237 NA non-coding downstream 153261 15941098 ~ 15966413 (-)
G184881 NA non-coding downstream 173216 15891780 ~ 15946458 (-)
LOC111195238 NA non-coding upstream 312615 16453885 ~ 16462187 (-)
G184939 NA non-coding upstream 321408 16462678 ~ 16468266 (-)
G184944 NA non-coding upstream 353277 16494547 ~ 16541739 (-)
G184945 NA non-coding upstream 353460 16494730 ~ 16511182 (-)
G184946 NA non-coding upstream 357089 16498359 ~ 16501566 (-)
smim14 smim14 other downstream 447720 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 738466 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 779094 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2028084 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2029887 14089706 ~ 14089787 (-)
lrat lrat other upstream 756908 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1088815 17230085 ~ 17241027 (-)
G185295 NA other upstream 1110997 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1154231 17295501 ~ 17300782 (-)
nutm1 NA other upstream 1172100 17313370 ~ 17328889 (-)

Expression


Co-expression Network