G186416


Basic Information

Item Value
gene id G186416
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 661569 ~ 662228 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252759
cCAAACCCCACACAAAGTCCACACTCCATACACAGTCCACACCCCAAACACAGTCCACAatccacacacagtccacaccacacacaatccacaccccacacactccacaccacacacactccacatctgacacacacaccccacaacacacactccacaccacacagtccacaccccacacaTTCCTTACCCCACCCCACACATTCCACGCCACACACTCTCTACAGCCCACAccacaaccacttagcaaccatgtggaatatgttagcaactggaATATGTTATtatctgcctagcaaccacttagcaaccactttagaaattattgcaacagcctagcaaccacttagcaacaccttagcaaccaccttgaaaatgttagcaactgccaagcaaccacttagcaaccatgtggacacaccacacacactccgcacaccacatacactccacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252759 True 457 lncRNA 0.50 2 661569 662228

Neighbor

gene id symbol gene type direction distance location
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 14314 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 60562 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 75765 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 83667 569183 ~ 577902 (+)
bcdin3d NA coding upstream 118039 541330 ~ 543530 (+)
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding downstream 66317 728545 ~ 767457 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding downstream 329706 991934 ~ 1005603 (+)
LOC103042257 LOC108436685 coding downstream 351176 1013404 ~ 1026063 (+)
LOC103043017 NA coding downstream 366327 1028555 ~ 1038177 (+)
LOC103033530 LOC108436692 coding downstream 377894 1040122 ~ 1052816 (+)
G186410 NA non-coding upstream 33446 626712 ~ 628123 (+)
G186409 NA non-coding upstream 35192 615318 ~ 626377 (+)
G186401 NA non-coding upstream 98030 558952 ~ 563539 (+)
G186402 NA non-coding upstream 100057 559399 ~ 561512 (+)
G186385 NA non-coding upstream 163161 495704 ~ 498408 (+)
G186436 NA non-coding downstream 237713 899941 ~ 905045 (+)
G186440 NA non-coding downstream 277147 939375 ~ 976150 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding downstream 307257 969485 ~ 991047 (+)
G186449 NA non-coding downstream 334534 996762 ~ 1076400 (+)
G186438 NA non-coding downstream 345595 1007823 ~ 1008883 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 123353 510575 ~ 538216 (+)
G186231 NA other upstream 546482 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 2318269 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2730159 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5117663 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6414937 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6529926 7192154 ~ 7192226 (+)

Expression


Co-expression Network