G192806


Basic Information

Item Value
gene id G192806
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25190093 ~ 25192060 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261647
ACAGTTAGAAGAGTTTTTCTTTAAGCAACACAGGACACTAGAAATACCACTCACACCAGGTTGTACATATTGCTTTGAACCACCAAATTTGTTTATAAGTCATGCATGCCACATAGATGATATTATgtttatacaaaaataacacCAGTGCTTATTACTGTATCCATATGAAGTACAGAAAGTTGATGTTCCGTTCAGGAGACGATGTtcgcttttgttttttttttttttcccccccattGTCATTTATGTCCTCCTTACAGAATCGAGCACAAGGCAAGATCTGTTTTTGAGTAAATCTGCACATTCGGCGGTTGTGACTTATTCCGATATTCCAGTTTCAAAATGCAATCGTTTTATTTACAACTGGGATGCATCAACTCCTGAACTCCCAACCATACAAGATCTATGAGGAAACGTCAGTAGAGAGTAGCGTAGCAGTGCGGTCGAATTCGAGTAATtgcacaccatcatcatcatcatcatcatcatcatcaggtCCTTGTGTTAAGCTGTTGcattttttccacatttctttcCCTTGTCCTGCAGAGCTAAAACTGAACTGTCGGCGCTAAAACTGCTTAAGCAACAGTTAAAacagaaatgactgaaatgaagTCAATCGATTCGCATCAGATCCGCGTACAATCGCTGAAAATCCAGGAATGAGAAGATgaacaggggaaaaaaaaatctgaataaaataaaatataataaaaatcaaaaatctgataaagagTTCCTCACACAAATGCCTCTCATATAACATCTATAGTGATACCTCTGACTGAGACGGACTGAGAACTCTCAATGATATCATCTGATTTAATCTGATGTGATGAGGTTTGTAGGGAACAAAGCAGTAGTGTTATATCCATAATGTAGAATTGAATGTGGAAACATACAAATTAATTTGTGAttgtacaaaacaacaacactTTGGCAGAACTTTCTTAAAGCTTCTCTTGGTAATTCCCGAACCTTTTCAATCTTTAAACCCCACTGAACGTAGCACACGGTAATGCACAAAGGTGCACTAAAACGCTGTAATTTGGGGtaaaattactcaaataaaaaataataaaaaaactaaattaggaaaaaaaaagttcacactGGCAGGTGACAGAGCGAAAGTGACCAGAcatttgctcattcaaacaaaGCAGAATTGTAGCTAAAATggtcagttttaatgctctacttactaaacaaaatattgtgtttaatcacATGCATTTCCACTTTGGCAGAACTTTGGCAGAACTTTCCAAAAGTTTTGTTTGCTAACTCTTGAAACATTTCTATCTTTAAACCACATTAAACGCAGCAAACAGTTATGCTCAAAAACAGTAGCGAAAAGTTTGGTAATGGATTTTGTTGGTGTCTCTGGTGGCTTGGTTACTCGATAGGTAGATTACTAGCTAaattagccagcatgctaaccagTCAAGCTGATACATACCCCCAATAAGACAAATGGAACATGAACGCATGGTAAGGGTGTAAACAATTTATAGCCGAGATTAAGCAACAAGTGACACAAAATTTACATTCCATACCATTTTTTATACCAATTGACTTGGGCCAACTTACTGCCttgccagtgtgaacgcagggtaatgAATCatatttgaaaagaaaaaagtaataagtaaaaataaattatgaagcgatttaaaaacagtgtaaatgtacacaTATGCATCCAAAATATTTCCTTTCATCACTCAACACAGTATCCTTATCAGAACTAGTCATAGCAATGTCTGtgtaattacatttataaagtCTCCAGTTTGGTGAAGATATAACAACAGCTTTTATTTTGCCACTGCACATAAGACCCTTATTTCCCCCAAGCCAAAAGCAGGCTCGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261647 True 1885 lncRNA 0.36 3 25190093 25192060

Neighbor

gene id symbol gene type direction distance location
LOC103045744 NA coding downstream 389192 24774039 ~ 24800901 (-)
nfasc nfasc coding downstream 906394 24147827 ~ 24283699 (-)
LOC103040944 LOC108425718 coding downstream 1163048 24015546 ~ 24027045 (-)
LOC103040645 chia.2,chia.3,LOC108425699,LOC107555079,LOC107685745,LOC107727181,LOC107655977,LOC107727762 coding downstream 1188145 23994623 ~ 24001948 (-)
LOC103040327 LOC108425717 coding downstream 1201894 23980543 ~ 23988199 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding upstream 43054 25235114 ~ 25354477 (-)
LOC103039085 NA coding upstream 316428 25508488 ~ 25554687 (-)
LOC103038137 NA coding upstream 335582 25527642 ~ 25537003 (-)
ppfia4 ppfia4 coding upstream 395666 25587726 ~ 25770719 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 816736 26008796 ~ 26085478 (-)
G192763 NA non-coding downstream 226303 24962509 ~ 24963790 (-)
G192758 NA non-coding downstream 280064 24909809 ~ 24910029 (-)
G192757 NA non-coding downstream 284748 24905140 ~ 24905345 (-)
G192754 NA non-coding downstream 329693 24844555 ~ 24860400 (-)
G192597 NA non-coding downstream 838035 24300206 ~ 24352058 (-)
G192821 NA non-coding upstream 70979 25263039 ~ 25263994 (-)
G192822 NA non-coding upstream 170471 25362531 ~ 25362736 (-)
G192869 NA non-coding upstream 259208 25451268 ~ 25451654 (-)
G192871 NA non-coding upstream 266353 25458413 ~ 25458628 (-)
G192887 NA non-coding upstream 310443 25502503 ~ 25503530 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1084195 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2131288 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2386451 22786163 ~ 22803642 (-)
amhr2 NA other downstream 2467188 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 2827635 22349347 ~ 22362458 (-)
G192815 mdm4 other upstream 19615 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 682850 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 1519193 26711253 ~ 26724106 (-)
G193097 NA other upstream 1839603 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 2198734 27390794 ~ 27391571 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1460249 LOC106565103 misc NC_048581.1 CM023235.2 51080132 ~ 51137770 (+)