G192944 (tmem183a,LOC107656009,LOC107727871,LOC107739272)


Basic Information

Item Value
gene id G192944
gene name tmem183a,LOC107656009,LOC107727871,LOC107739272
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 25775397 ~ 25779194 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261818
CTTAGAATTGAGTAGTGTGGTTGGAGTAGACTCTGGCAGAGGGGGGCACTTGGATACTCTCAGACTGAATGGCTCGTACAGATGAAAGAGGGAGCGGATCACGCGAGCACGGAGACAATACATCCTCGTAATGGAGCCTGGCTGAAGGCGAGAAGGGAGGTCTGCATCAAGATTGTAGTGtCTCTTATATAGTCGAGTCCAAAATGCAGCAGTACATGTGACAGCCCAGGAATTTCTGCAGATCAGTGCAAACCTGCAGACGTCTTCAGGACGTATGTATGCAGCGAGTACATGCCATATATCAATGGGATACTCCTCTCCATCAGAGCTTTCGCTATTTTCTTTgcgtctcttatttttcttcttacGCGAGACCTTGCCTTCACTGTCACCTTCCTCTGAATCCAGCTCTTCGCTGCTGTCACATACATCTTTACTCACGCCAGCTGCTGACGATAGCACATCTTGAACAGGCCCCTGAGAGGCCTCGAGCCCACAGAGTAAttttaCTTCTTTTTCTATcgcattagcaactgccttctTCACTCTCCCGGACTTCACAACGGCGGGATCCGCGTTGGCGTAGTCAGCCACCGTCACTGACTCCGAGCAAACATCTCCGGCCCGAAACTTCAGCCGTTTTCGGTTCCCTTTCTTGGGCATGACGACGACGCGAGTGTGTGGCCGTTTACCGAAGCTGCGCGCGCTGCCATGTCTGCAGCAGAGGAGGCGGGAAACGGAaaggaatgagagagaaaacgGGGTAAGCTCCTCCAGGATCTTCAGCCATCATGGAAGTGA

Function

symbol description
tmem183a Predicted to be involved in regulation of protein stability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human TMEM183A (transmembrane protein 183A).

NR:

description
transmembrane protein 183A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261818 True 801 lncRNA 0.52 5 25775397 25779194

Neighbor

gene id symbol gene type direction distance location
ppfia4 ppfia4 coding downstream 4678 25587726 ~ 25770719 (-)
LOC103039085 NA coding downstream 220710 25508488 ~ 25554687 (-)
LOC103038137 NA coding downstream 238394 25527642 ~ 25537003 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 420920 25235114 ~ 25354477 (-)
LOC103045744 NA coding downstream 974496 24774039 ~ 24800901 (-)
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding upstream 229602 26008796 ~ 26085478 (-)
LOC103035733 foxp4,LOC107739274,LOC107728618 coding upstream 335243 26114437 ~ 26349705 (-)
il10 NA coding upstream 1349958 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 1368520 27147714 ~ 27153326 (-)
prelp prelp coding upstream 1383553 27162747 ~ 27170995 (-)
G192892 NA non-coding downstream 195088 25578863 ~ 25580309 (-)
LOC111195414 NA non-coding downstream 233039 25540022 ~ 25542358 (-)
G192887 NA non-coding downstream 271867 25502503 ~ 25503530 (-)
G192871 NA non-coding downstream 316769 25458413 ~ 25458628 (-)
G192869 NA non-coding downstream 323743 25451268 ~ 25451654 (-)
G192947 NA non-coding upstream 3188 25782382 ~ 25785455 (-)
G192951 NA non-coding upstream 29874 25809068 ~ 25818951 (-)
G192952 NA non-coding upstream 40014 25819208 ~ 25825956 (-)
G192955 tfeb non-coding upstream 75471 25854665 ~ 25858416 (-)
G192956 NA non-coding upstream 77189 25856383 ~ 25857155 (-)
G192815 mdm4 other downstream 557847 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 1669499 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 2716592 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 2971755 22786163 ~ 22803642 (-)
amhr2 NA other downstream 3052492 22709549 ~ 22722905 (-)
LOC111195415 tfeb other upstream 95716 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 932059 26711253 ~ 26724106 (-)
G193097 NA other upstream 1252469 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1611600 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1645848 27425042 ~ 27701331 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_02348646_02354404 TMEM183A coding CI01000058 null 2348615 ~ 2355085 (+)