G193005


Basic Information

Item Value
gene id G193005
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 26227608 ~ 26297229 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU261905
aatcagtaggtCAGTAAGACATTCAGGCAGTAAGACATTAAGGCAGTAAGGCAGTGGTCAATAAAGCAGTAGGCAGTGAAGCAGTAAGGCACTGAGGCAGTAGGGCATTGAGACAGTATGGCAGTAAGCCAGTAAGACATTGAGGCAGTAAGAGATTAAGGCTGTATGACATTAAGGCAGTAAGGTAGTGATTAATACGCCAGCGGTCAGTAAAGCAGTTGGCAGTAAGGCAGAAGGCAGTAAGACATTCAGGCATTATGGCATTAAGGCAGTAAGACAGTGGTCAGTAAGGCATTAAAGCAGTGAAGCAGTAAAGAACTAAAGCAGTAAGGCAGCAGTCAATTAGGTTTTAAGGGAGTAAGAGGCACTGAGGCAGTAGGGCATTGAGCCAGTATGGTAGTAAGGCAGTGAGGCAGTAAGCCAGTAAGGAAGTAGGCAGCAGGCAGAGAGAAGAGACAGTAAGGCAGCAGTCAATGAGATTTTAAGGGAGTAAGAGGCACTGAGGCAGTAAGCCAGTAAGCAGGTAGGCAGCAGGCAGTCATACTGTGAATCAGTAAGGCAGTAAGGTGAAGGTGTGAGGTGAAGTGAGGAGTGAGGGACTGGATGGGCTGAGAGTCAGTGAGCGAGTCAGTCAGCGTGTGAGGCAGTACGTAAGAGCAGGCCTGAATTTCTCCGATCATCAATAATCCGGCAGCGAGTGTGGGCTGACAGGCTAAATGGCCGTGGTGAGAGGTTTTCCCTTCAGAGTAATTAACATTATCAAGGAACAGCAGGTTAGCTCGTTAGCGCCGCACTCATTTAATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261905 True 806 lncRNA 0.48 2 26227608 26297229

Neighbor

gene id symbol gene type direction distance location
LOC103036054 mdfi,LOC103036054,LOC107548515,LOC107675846,LOC107728619 coding downstream 142130 26008796 ~ 26085478 (-)
ppfia4 ppfia4 coding downstream 456889 25587726 ~ 25770719 (-)
LOC103039085 NA coding downstream 672921 25508488 ~ 25554687 (-)
LOC103038137 NA coding downstream 690605 25527642 ~ 25537003 (-)
lrrn2 lrrn2,LOC108425772,LOC107603068,LOC107739267,LOC107727852,LOC107675837,LOC107656005 coding downstream 873131 25235114 ~ 25354477 (-)
il10 NA coding upstream 831923 27129152 ~ 27133856 (-)
LOC103047370 NA coding upstream 850485 27147714 ~ 27153326 (-)
prelp prelp coding upstream 865518 27162747 ~ 27170995 (-)
LOC103032351 LOC108435192 coding upstream 899822 27197051 ~ 27210316 (-)
LOC103031188 chia,LOC108435172,LOC108255197,LOC108255198 coding upstream 977428 27274657 ~ 27290319 (-)
G192955 tfeb non-coding downstream 369192 25854665 ~ 25858416 (-)
G192956 NA non-coding downstream 370453 25856383 ~ 25857155 (-)
G192952 NA non-coding downstream 401652 25819208 ~ 25825956 (-)
G192951 NA non-coding downstream 408657 25809068 ~ 25818951 (-)
G192947 NA non-coding downstream 442153 25782382 ~ 25785455 (-)
G193014 NA non-coding upstream 137279 26434508 ~ 26434782 (-)
G193017 NA non-coding upstream 195974 26493203 ~ 26493562 (-)
G193018 NA non-coding upstream 280503 26577732 ~ 26577984 (-)
G193020 NA non-coding upstream 321517 26618746 ~ 26618978 (-)
G193049 NA non-coding upstream 579141 26876370 ~ 26876620 (-)
LOC111195415 tfeb other downstream 348955 25874910 ~ 25878653 (-)
G192815 mdm4 other downstream 1010058 25211675 ~ 25217550 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other downstream 2121710 24039246 ~ 24105898 (-)
G192251 adipor1,LOC107749488,LOC107385668 other downstream 3168803 23054633 ~ 23058805 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 3423966 22786163 ~ 22803642 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 414024 26711253 ~ 26724106 (-)
G193097 NA other upstream 734434 27031663 ~ 27033089 (-)
LOC111195340 NA other upstream 1093565 27390794 ~ 27391571 (-)
LOC103046149 LOC102777140,LOC108436414,LOC102208887,LOC105027122,LOC108280970,LOC103144351,LOC107751002 other upstream 1127813 27425042 ~ 27701331 (-)
tmem167b tmem167b other upstream 1713762 28010991 ~ 28015612 (-)

Expression


Co-expression Network