timm17a (timm17a,LOC107727855,LOC107554688,LOC106582745)


Basic Information

Item Value
gene id timm17a
gene name timm17a,LOC107727855,LOC107554688,LOC106582745
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 22940330 ~ 22945009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248412.3
AACCGGAACCTGCTGATCTGACGTCAACCTTGAACTGTCTTTTGTCCGGTGACGTCATTCGGAGCAGTAACAGAACAAGATGGAGGAGTACGCGAGAGAACCGTGtcCCTGGAGGATAGTAGATGACTGTGGCGGTGCATTCACAATGGGAGCTATAGGTGGAGGAATCTTCCAGGCTGTTAAAGGTTTCAGAAACTCACCTGCTGGAATAAATCACAGACTGAAGGGCAGCATGACTGCCATCAGAACCAGAGCTCCACAGCTAGGAGGAAGTTTTGCCGTCTGGGGCGGACTCTTCTCGATGATCGACTGTGGGCTGGTGAAAGTTCGGGGGAAAGAGGATCCCTGGAACTCGATAACAAGTGGAGCCATGACTGGAGCTATCCTCGCTGCCAGAAATGGGCCTGTGGCCATGGTTGGTTCTGCTGCTATGGGAGGCATACTGTTAGCTTTAATTGAAGGTGCAGGAATCCTTCTCACAAGGTTCGCTTCAGCACAGTTCCCCACTGgtCCACAGATGGAGGACCCTGCCCCCATGCCGGCTCCTTCATTTGGGGACTACAGACAGTACCAGTGAGGTCCGATCCAGTCTGTGGACAGGCTTTAATATTCCATGAACTCGTCTGAGAACTCATCTGAGTTAAAACTTCAGCCTCTGTGgaactttctgtttctctgttgttGAATGAGCATGAACCGAACCAACGCACCTCACCAGTACGGACTTGTGTCGGAGAACGAAAAGGGCAACACTTTTGTGTTGGTTAATGGACtcgttttagttttatttagtttatggTCCCTCCTCCTTCCAGACTGGGTCGTCTTCAGTATGCCTTTTGCCATCTAAGCCTTCTGTCATCTATTCACACCTCTGTTATCTATCCCGTTGGCTCAGACAGGGGGTGGGTCAAGAAACATCTCTCTTTAGCAGGTTGTGGCAGTTTGTTCCAAAAAGGCTGGTGGTTTCCTGATCTGGTTCTGGAGTAGCTCAGTATTttgcttttgttctttttgttctaATGCACTGATGTTAAGCTCAGTAAGGGTTTGTGTATTAGTTTATGGTTTCTGTGCTTTGTAGAACAAAGAACTCTAAACTGAAATTCTGGAGTACTTCACAACTAAGACCGGGGAACAAAAGTACTTGTCCGACTTTGGACCTTTTGCTCAGAAAGAAGCAGAAATTGTGTGGataagcttgtgtgtgtgtgtgtgcgtggaaGGTAAtctatcaatattattattattattattatattctgcCTTAATGTTCACTGTCTCTTTAGTTCCACAGAACTCTTGTATAGATAAAAAAGTTGTAAATTTATTGCATAAACTTTACCATCTGAACATGTCCCTGAA
>XM_022682656.1
CTGACAGGCGGGGTGACCTTGCTCTGAGAGCGGCGGAGCGGGGGACTCGCGGGCACACTCATAACACAGCTACAAACTAACTACATAACCACGAGACTAAGCTAATTTTATATCACCGATTTAACTAAAATAATCCAGACAGAGCTGAAATATTAACTTAAACTCTGAGTGATCTGACATGCTCCACAGATTAATGAGGTTTATACCTCAGAGtcCCTGGAGGATAGTAGATGACTGTGGCGGTGCATTCACAATGGGAGCTATAGGTGGAGGAATCTTCCAGGCTGTTAAAGGTTTCAGAAACTCACCTGCTGGAATAAATCACAGACTGAAGGGCAGCATGACTGCCATCAGAACCAGAGCTCCACAGCTAGGAGGAAGTTTTGCCGTCTGGGGCGGACTCTTCTCGATGATCGACTGTGGGCTGGTGAAAGTTCGGGGGAAAGAGGATCCCTGGAACTCGATAACAAGTGGAGCCATGACTGGAGCTATCCTCGCTGCCAGAAATGGGCCTGTGGCCATGGTTGGTTCTGCTGCTATGGGAGGCATACTGTTAGCTTTAATTGAAGGTGCAGGAATCCTTCTCACAAGGTTCGCTTCAGCACAGTTCCCCACTGgtCCACAGATGGAGGACCCTGCCCCCATGCCGGCTCCTTCATTTGGGGACTACAGACAGTACCAGTGAGGTCCGATCCAGTCTGTGGACAGGCTTTAATATTCCATGAACTCGTCTGAGAACTCATCTGAGTTAAAACTTCAGCCTCTGTGgaactttctgtttctctgttgttGAATGAGCATGAACCGAACCAACGCACCTCACCAGTACGGACTTGTGTCGGAGAACGAAAAGGGCAACACTTTTGTGTTGGTTAATGGACtcgttttagttttatttagtttatggTCCCTCCTCCTTCCAGACTGGGTCGTCTTCAGTATGCCTTTTGCCATCTAAGCCTTCTGTCATCTATTCACACCTCTGTTATCTATCCCGTTGGCTCAGACAGGGGGTGGGTCAAGAAACATCTCTCTTTAGCAGGTTGTGGCAGTTTGTTCCAAAAAGGCTGGTGGTTTCCTGATCTGGTTCTGGAGTAGCTCAGTATTttgcttttgttctttttgttctaATGCACTGATGTTAAGCTCAGTAAGGGTTTGTGTATTAGTTTATGGTTTCTGTGCTTTGTAGAACAAAGAACTCTAAACTGAAATTCTGGAGTACTTCACAACTAAGACCGGGGAACAAAAGTACTTGTCCGACTTTGGACCTTTTGCTCAGAAAGAAGCAGAAATTGTGTGGataagcttgtgtgtgtgtgtgtgcgtggaaGGTAAtctatcaatattattattattattattatattctgcCTTAATGTTCACTGTCTCTTTAGTTCCACAGAACTCTTGTATAGATAAAAAAGTTGTAAATTTATTGCATAAACTTTACCATCTGAACATGTCCCTGAA

Function

symbol description
timm17a Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human TIMM17A (translocase of inner mitochondrial membrane 17A).

NR:

description
PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity molecular_function

KEGG:

id description
K17795 TIM17; mitochondrial import inner membrane translocase subunit TIM17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248412.3 False 1365 mRNA 0.46 6 22940330 22945009
XM_022682656.1 True 1473 mRNA 0.45 6 22940330 22944717

Neighbor

gene id symbol gene type direction distance location
LOC103025695 sulf2a,LOC108412941,LOC107655065,LOC107749484,LOC107685697,LOC107600506 coding downstream 14662 22850141 ~ 22925668 (-)
LOC103042162 LOC108412995 coding downstream 100006 22805581 ~ 22840324 (-)
LOC103040941 ndrg3,LOC108412994,LOC107655061,LOC107727846,LOC107749481,LOC107562126 coding downstream 157858 22739733 ~ 22782472 (-)
LOC103040317 faim2 coding downstream 234841 22693076 ~ 22705489 (-)
LOC103024753 LOC108424569 coding downstream 300782 22460458 ~ 22639548 (-)
lmod1 NA coding upstream 6715 22951724 ~ 22959046 (-)
shisa4 shisa4,LOC107561500,LOC107727880,LOC107655068,LOC107749490,LOC107685700 coding upstream 18699 22963708 ~ 22972405 (-)
ipo9 ipo9,LOC106566056 coding upstream 29195 22974204 ~ 22993650 (-)
LOC103025998 kdm5b,LOC107600688,LOC107685701,LOC107561016,LOC107749493 coding upstream 51085 22996094 ~ 23028601 (-)
rabif rabif,LOC107601129,LOC107581890,LOC107749491 coding upstream 88466 23033475 ~ 23036792 (-)
G192235 NA non-coding downstream 1176 22938921 ~ 22939154 (-)
G192145 NA non-coding downstream 204088 22735091 ~ 22736242 (-)
G192149 NA non-coding downstream 252192 22684675 ~ 22688138 (-)
G192138 NA non-coding downstream 286483 22609381 ~ 22653847 (-)
G192137 NA non-coding downstream 407614 22532454 ~ 22532716 (-)
G192237 NA non-coding upstream 5998 22951007 ~ 22951326 (-)
G192232 NA non-coding upstream 16238 22961247 ~ 22962809 (-)
G192240 NA non-coding upstream 85643 23030652 ~ 23031070 (-)
LOC111195460 NA non-coding upstream 153829 23098838 ~ 23100988 (-)
G192288 NA non-coding upstream 160099 23105108 ~ 23105627 (-)
LOC103041653 phf20,LOC107655063,LOC107727854,LOC107561906 other downstream 136688 22786163 ~ 22803642 (-)
amhr2 NA other downstream 217425 22709549 ~ 22722905 (-)
alas1 alas1,LOC106583798 other downstream 577872 22349347 ~ 22362458 (-)
G191862 dusp7,LOC107561798,LOC107697567,LOC107677944 other downstream 1088688 21846969 ~ 21851642 (-)
elmo2 elmo2,LOC106583331 other downstream 1395499 21510924 ~ 21544831 (-)
G192251 adipor1,LOC107749488,LOC107385668 other upstream 109624 23054633 ~ 23058805 (-)
cntn2 cntn2,LOC107727196,LOC107558367,LOC107727774,LOC107602860,LOC106565094 other upstream 1094237 24039246 ~ 24105898 (-)
G192815 mdm4 other upstream 2266666 25211675 ~ 25217550 (-)
LOC111195415 tfeb other upstream 2929901 25874910 ~ 25878653 (-)
fam72a fam72a,zgc:101564,LOC108425783,LOC107590148,LOC107656018,LOC107548849,LOC107675824 other upstream 3766244 26711253 ~ 26724106 (-)

Expression


Co-expression Network