G72760


Basic Information

Item Value
gene id G72760
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 6557200 ~ 6561611 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU82988
CGGGAATCCAATAGGCGAGTCGTAGCTGCAAGCTCTGGCACTAGGAAAAGCTCATTTTCCATGAATCAAAAAATGATTTCAAAAACATATTTAATGTGCCGCCGCACCTTGTTCTCTGAGTGACGCCGCATTAAAGCTAGTGCATTTGATGTTGGCGACAGCACTAGAGGAGGACGGCTGTGGCTAACACCTGTGGATAAATCATAGACTATGCTGCTTTAACACGCTTTGTTCTGCTCCTCACTGCCTTGTAACAAACGCTGTTGTTTGAGCTTAGCTTCTGCAGAGATAGCTTTAATACTGACGCCATCCTGTGAAGGTTAAACAAGAGGGTTTGTGACTGGATTAGTTCCCATTAAGATAAGAGTTCAAATATGCTAGAAGTTATAAAGGCAGTGACTCAAAATACAGTCTGAATTTGTGAACTTTTAGACATACCCTTACAAACATTTACAGTTTCCAGCAAAAATATAGTAACTTGTTAAAAAAAAAAAAAAAAAAAAGGATGATGGTAGTGTCAGTATTTTGCCAGACACTATGGTAAATGTTTGTGAGGGTAGACCTAGAATAGGTTTGCTGTTTAGAAGGACAAAATATGGTAGGTTGTTGTTTGCTAAAGTATCAGTTTACTGAAAAAAATGACTTCATTCTTTGTGCTGCATATTGAAGAGAGATATCAGCCTGGGGAAATTTCCCCAAAGACATCAGTGCTGCCTGCTTTAATATTAAAGAAAGAAAGAAAGAAAAAACACCATCTCCAACCCTCTGGCTTTAAGACAAATGGAGAAATTGTGGTGTTAATAGCCTGCTACCCCCCTTCAGTATACGAATTTAATTATCTTTGGTCCATCTTATTGAGAAGCAAGTAATTATTTCAGTGCTACACAACCAAAGAGGCTGAAACAGCAGAATTCGAAGGCTAATGGCTCCTTAAACAGGTTTCCAAACCCTGACAGAACATCCTGAAGAGACTCCAACTTAGTCTGATTTTTCCTCAACAATGCTTGGAAGAAGGGAATGCTGGGTGATATGGACTTTGACAGCTGAACTTATCTCAAGAGAACAGAGATTTTCTCATACCTTTTTTATCAGTATCATTGTCATCATCTTCCTCTCCTTCCATGGGCTGCGTGTTACCTGTCAAAAATCATCATACCACTTATGAGAACTGTAATCCAAAAACTACATTTTTTACACTTAAAAAAATAAAAATAAAAAAAGTAAAAAACATAAAAATGCGTATTTGTCCAAAAAAAATCATACCACTCATGAGAACTTGCCAGGCCATTACCAATGTGTTCTGATAAAATAAAAAAATAAAAAATAAAATAATAATAAAATTAAATAAAATTAAATAAAACAAAACAATAATAAAATAAAATAATAAAATAATGTGTATCTGTCAAACAAAAAAAAAAGAAAAAAAAAAATCATACCACTCATGAGAACTTGCCAGGACATTACCAATGTGTTCTGATAATAAAATAAAATAAAATAAAATTTTAACTATAAGTATTAGCAATAATAATTAGCAAGCACCACTAATTAAATTGCAAAATAAATATAAAGAAATATAGTTGAGTAGCTCTCTTATCTCTTCATAAGCTGAAAAAACAACCCTTTATTAATCTCAGAACTGAAAAAGGGCAACTGCCAGCTCACTACAAAAAATAAAAAATAAATAAAAAAAAACATCCAAGGTTACAAGGCACAGATTGCCTATACTGAACAGCACTGATAAGGGTGAAATGAGCGGAGGAATATCCTGCTATTGTGTCGTAGGCCCTGCTAGAGTGTATACATGCACCAGGTGATTCTGCATCAACAGGGGCTTTTGTGCGCCTCGGCAAAACCCAGCTGATAAAAAAAATGGGGCCTGTAAAAGTGTAGTGTAAGGGATTTTGGTGAAAGACAGCAAGAAAAAGAAGGTGAAACAGAGAGACGGAGAGAAACGGATTGATTGATAGAGAGTGGGAGAGAGCTGATACAGGGGGATAAGGGGAAAAAAGCCTCAATTCCTTGTGAGAATGGCAACCATTTGAGCCTTTGAATTGGTTCCAGAGAAAAAGAGAGAGAATCAGAGCCCTGGCTAAGTGAAGCGCTGCTAAAGGCCAGGGCTTGGCTGCCAGTCAGACATTCACTGAATGTAACTGAGGCTAAGCTAGCCGAAACTGCTGGGGCAGGAAAAGCAGTGTGCTCGGAGTGTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGAGATGTGATACTTGGTGTGTTGTGAACAAGATGGAAACCTGATAGGTGTTGCCATGCCGGGTCATCCCGGTCCAGTGTTTACAATGAGATATAACAGCGTCCACAAAAGAGGTGATTGGTCTCCCTGGTTTTGTGCAGAAGTAAACACAACCACACAAAGCCCCAACGCAAGGACTTCAGTAGTTCAGAGGGCTATTAGACGCTTGCTGGATTGCTTCAGAATACCGTTTTATAACACGGCTGTAAAAAAGTCAATGTTAGGTGCTGAAAAAAATGCTTGTTCTGGATCGGATCTGGTTTTGATGGCCGTCTTGACTTACAGATACAGTCCTGTGAACAGTTTCTTACATTCATAGTAAAAATTACAGCGTGCAGCCCTACTTTTTTTTTTTTTTTGCTTCATGTCGTTGAGGCATGAACATGTTCTCCTCCTCTAAGATGCTTCATTTAGCACTCCTCCTCTTTCACCCTCTGTATTTTCAATCACCTAACTTTTGTAGAAACGATCAATGCTGGCCTTGTTACACTGCCAGAAAACTTCCATCTTATAATTCCATAAAGCTTAAGTGACTGTTGGAGATGTTTGACCTGGGTTCAGTCTTCCAGCTCAACAAAAAACCTACAGTACTTTGTTAGTTATTTTAACATTATTATATATTTAGGGCCCAAGCACCGATGGTGTGAGGACCCTACTGTAATTGCTCAGTCAATTCTTCTTCTTCTCCGAAACGAATCACATTTTTGAGGGCCTAAACATGCTCGAAAACTCATGAAACTTTGCACACGTGTCAGAAGTGGTGAAAATTTACGTCTGATATGGGTTTCAGAATTAGTTGTGGCAAAATGGCTCGATAGCGGCACATACAAAATTACAATTAAGCGCCCTTCACGCTATGTTTCATGTAAAAGTATGAAACCCAACAGTAAGTGAGATATTTTGAATTTTCAGTTTTTGCCATTTCCAGACGTTGTACTTTAACAAACTCCTCCTACAGCTTTAATCAGATCAACATCATATTTGGTCAGTCTAATCTAAAGGCCTTTGCGACGTTAAATTGCGAAGATCTTGAGTTTTCGGTGAAGGGTGTATCCGTGGCGGCCTGACAAAATTCGATGTTTCGCCATGAAACAGGAAGTTGTTGTAACTCGGGCATAAATGTCCGATCTGTCCCAAACTTCACATGTTTTATTAGAGTCCTGGCCTGAAGACATCTACATGCCAATATTCAGTTACAGTCATAGCGCCTCCTGCGGGCAACAGGAAATGTCATGTTTTACACTATGATTAACTCCTCATTGAGATTTAACCAGAACAACTTCATATTTGGTCAGTCTAATCTTAAGGCCTTAGCGACAATAAATTGCGAAGATCTTGAGTTTTCGTTGAACGGCGTGTCCATGGTGGCCTGACAAATTCTGATCAAATTCATGCTTTTGTAAGTCAGGCATACAATGTCCAACCTGCCCCAAACTTCACATGTTTGATAAGAGTCCTGGCCTGAAGACATCAACATGGCAATATTTAGTTAAAGTCAAAGCGCCACATGTTGGCAGCAGGAAATGGCATGCTTTACACTGAAATTCACTCCCTGAAACACATTTCAATATGCCACAAAGTACCAAACATGCTAGAAACGTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82988 True 3904 lncRNA 0.39 3 6557200 6561611

Neighbor

gene id symbol gene type direction distance location
CI01000012_06441231_06476986 KIF16BB coding upstream 80096 6441192 ~ 6477104 (+)
CI01000012_06380300_06388370 ISM1 coding upstream 168209 6380300 ~ 6388991 (+)
CI01000012_06334114_06368535 SPTLC3 coding upstream 188109 6333349 ~ 6369091 (+)
CI01000012_06208439_06217101 BTBD3B, BTBD3 coding upstream 339286 6208439 ~ 6217914 (+)
CI01000012_06182472_06192196 NA coding upstream 364587 6181007 ~ 6192613 (+)
CI01000012_06620470_06637571 NA coding downstream 58449 6620060 ~ 6637689 (+)
CI01000012_06651665_06682236 NA coding downstream 89977 6651588 ~ 6682700 (+)
CI01000012_06826817_06842273 NA coding downstream 264312 6825923 ~ 6842529 (+)
CI01000012_06862144_06865773 NA coding downstream 299931 6861542 ~ 6866078 (+)
CI01000012_06938165_06970627 NA coding downstream 375979 6937590 ~ 6970901 (+)
G72713 NA non-coding upstream 158560 6397486 ~ 6398640 (+)
G72731 NA non-coding upstream 160190 6396744 ~ 6397010 (+)
G72730 NA non-coding upstream 160497 6396397 ~ 6396703 (+)
G72572 NA non-coding upstream 303046 6253943 ~ 6254154 (+)
G72568 NA non-coding upstream 305887 6250993 ~ 6251313 (+)
G72757 NA non-coding downstream 513055 7074666 ~ 7087621 (+)
G73150 NA non-coding downstream 669575 7231186 ~ 7231443 (+)
G73223 NA non-coding downstream 698215 7259826 ~ 7260038 (+)
G73224 NA non-coding downstream 699249 7260860 ~ 7261065 (+)
CI01000012_05923216_05928055 SRD5A2B other upstream 632895 5922385 ~ 5929186 (+)
G71623 NA other upstream 740595 5813517 ~ 5816605 (+)
G71548 NA other upstream 995767 5550493 ~ 5561433 (+)
G71221 NA other upstream 1016744 5538525 ~ 5540456 (+)
G71218 NA other upstream 1018816 5535852 ~ 5538384 (+)
CI01000012_07806089_07811902 BEND3 other downstream 1244492 7805248 ~ 7811902 (+)
G73578 NA other downstream 1805195 8366806 ~ 8367627 (+)
CI01000012_10223957_10235955 NA other downstream 3660344 10223697 ~ 10236276 (+)
G75533 NA other downstream 4583206 11144817 ~ 11145739 (+)
G76385 NA other downstream 6069144 12630755 ~ 12675666 (+)

Expression


Co-expression Network