CI01000013_09430170_09443518 (RBM28)


Basic Information

Item Value
gene id CI01000013_09430170_09443518
gene name RBM28
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9430170 ~ 9444023 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_09430170_09443518.mRNA
ACTTGACATCTCAGCATTGTCGCGACTTGGAAAAGACCTACCCATACATGCTTCTCCAGACCAGCAGGAGTCAATATTGCTTCTTATCGCGCAGTGCTACCGTGACAACGTCCAAACCAAGCGAAGAATTTCCCTCTTGACAACTTCCTGTACAGCAGAAGCATTCACTTTATTTGTCAGGAGATTACCTGAAACAACCACAAATGAGCGTCTAGCAAAAGTATTCTCTGAAATAGGACCACTGAAGAATTGCTTCGTTGTCAGGGATAGAGGTTCAGGAGACAAAGAGAAACCTGGGAAACCTGAGAAACCAACAGAAACCAAAAGTCCTGAAAAGTTTACAGGCATAAAAAAGAAAAATTTAAAAGCTCGACTGATCATCAGAAATCTCAGTTTTAAGTGTGAAGAAGATGATTTGAAGAAGATCTTCTCCAAGTTTGGAACCGTGCTTGAGGCCAACATTCCCTTAAAACCAGATGGGAAGAAGCGTGGTTTTGCATTTGTGCAGTTTAAGTGCATGTCAGAAGCTGGAAAAGCTCTCGCTGCAATGAACCTGAAGGAGATCAAAGACAGAAAGGTGGCTGTGGATTGGGCTATTGCAAAGGACAAGTATCAAGCTACCCAATCAGCGGCTGGAACTATCAAAGAAGAGAATGTGAGTTCTGAAGGTGCAGGAGCTGATGGGAATGAAGGTGCCAAGAAAAAGTCTGTATCGCAAGAAGAGAAGGATGACTCCGAGTCAGAGGAAGAGGACGCTTCAGAGGATGATGACGACGACGACAGTGCAGAAAATGAATCTCAGCATACAGATACTCTTCCAAAGAAGAAGAGAGACCCTCTTCCTTCAGATGTGAATGAAGGACGAACCATCTTCATCAGAAATCTGTCCTTTGACACAGATGAAGAGGGTTTGGAGGAAACTTTGTTGCAGTTTGGCGAGCTAAAATATGTACGTGTGGTGATGAACGCAGACACAGGATATTCAAAAGGTTGTGCTTTTGCTCAGTTCAAAAGTAAAGAAGCGGCAGAGAAATGTATTGCTGCTGCTGCTGCTCAAGATGAAAAAGAGTTTGGTGGCATTAAGGTTGATGGCAGGAGATTGTACATTTTGCCTGCTGTAAACAGAGAAGATGCTTCAAATTTAAAGGACAAGAAAGTGAAAACTCACACGGGCACCAGGAACCTTTACCTCGCCAGAGAGGGCTTGATTCGTCCTGGATCCAAGGCTGCAGAGGGAGTTTCAGAAACTGACATGGCCAAGAGAACAAGATTTGAGGAGCTGAAAAGGGCAAAGTTAAAGGACGTTAATGTGTATGTGTCTAAAACACGGCTGTGTGTGCATAACCTGCCTAAGAGCGTCCATCAGCCTAAATTTCGCAAGCTCTGCCTTGCTGCCGCTGGTGGTAAAGGCGTCCGCATCACTGAGTGCCGTGTGATGTATGACAAGAAGCCTATTCGGGGTCAGGTGGTCGGTCAATCTCTAGGATATGGCTTTGTGGAGTTTAAAGAGCATGAACAGGCTCTACAAGCACTACGTCACCTCAACAACAACCCAGACATCTTTGGACCTCAAAAGAGACCCATAGTGGAGTTCTCTCTGGAGGATGGTAAGAAGCTGAAACTTAAAGCCATTCGTCTGGAAAACAGCAAGAAGCGACTTAAACAAGTCAGTAGCCAAACAGAAGGGCAGCCGCTACATCCTTCAGGAAAAATGAAAGGTCCCTTGCAGAAAGGAAATGCAGCTAGTGTTGATAAACAGGAGAAGGCACAAGGAAGCCAGTACACCGGGTTTATGACCAAACCAGAGGTGGAGCACGTAGAACTGAAGGATGGCAAAAAACGGCAGAAGGTTCTTCACATGCCTTCACATAGAGGCCCAAAGATCAGGAAACGAGATAAAGGGAAACAACCCATGGTGCAACCCAAGAAACCGAAGAAAGGGCCCAGCAGGAAAGATAGAAATATGTCTACTTTCATTGAGAAACGCAGCATGAACAGTAAACAGGCAAGTCAATGTGTTAAAAAGTGTGTGTGTAATGGCAAACCTGCGAAGAGAAAGTTTCAGAACAGAGAGGATGCTCGCTTTGACAGTTTGGTGGACCAGTACAAAAAGAAACTAATGGGCAAATCAAACACTAAGACTTTAGTCAAGAAGAGCAAATGGTTCAGCTGAATATATGAGAGAAAAAGGACATGTAAAATGTTGAAATTTTTTTTTAGGAGGACTGAATTTAATACTTTGGCTCCGTTTCAGTTTTTAAAACTGGAAGAAAAAAAAAAAAAATCAACATGTGATATTATCAGACTATTTCTGGTAAAGATATAAGAGAATTGAGAGATGGTTCCAATATCTAACAGATTATTTTTTGTTGCTTATTAGTTTGGACGTCCCTTAAACTACTTGTTTATCAAGAGGGTCCCACGCCAAGTTTCATGTTTCCTGCTGGGTTTGGCACAGAGAGTTTTTTAAACATTACAGAGATAAGGCTTTTGTAGACTGGATGAGTCTTCAGCTGTTGTCCATATGGACTTTGCCAACATTCAGTTTAGCTGTCATTATTTAACTGCTCTCCTCAAACTTTGAAAACAGGTGTACATGATTTAAATGCCAGCAGGCAATTCCTGCCATCCCTTGTTATGTAAGTTATGTAATGGTTTTTTAACAATGTCTAAAAAAA

Function

symbol description
rbm28 Predicted to enable RNA binding activity. Human ortholog(s) of this gene implicated in alopecia, neurologic defects, and endocrinopathy syndrome. Orthologous to human RBM28 (RNA binding motif protein 28).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_09430170_09443518.mRNA True 2678 mRNA 0.43 19 9430170 9444023

Neighbor

gene id symbol gene type direction distance location
CI01000013_09279917_09290301 TSPAN33B coding upstream 139410 9279917 ~ 9290760 (+)
CI01000013_09243644_09260619 TSPAN9A, TSPAN9B, TSPAN9, TSN9 coding upstream 169551 9243644 ~ 9260619 (+)
CI01000013_09178561_09180465 NA coding upstream 249013 9177107 ~ 9195268 (+)
CI01000013_09075883_09113011 NA coding upstream 316887 9075825 ~ 9113283 (+)
CI01000013_08943859_08944315 NA coding upstream 485545 8942838 ~ 8944625 (+)
CI01000013_09681047_09683275 LRRC4, LRRC4.2 coding downstream 237024 9681047 ~ 9683433 (+)
CI01000013_10261599_10283287 NA coding downstream 816248 10260271 ~ 10283967 (+)
CI01000013_10335904_10336688 NA coding downstream 891881 10335904 ~ 10336896 (+)
CI01000013_10502138_10525511 GRM3 coding downstream 1056667 10500690 ~ 10525674 (+)
CI01000013_10586449_10594082 NA coding downstream 1141795 10585818 ~ 10594442 (+)
G82676 NA non-coding upstream 32975 9396932 ~ 9397195 (+)
G82580 NA non-coding upstream 41613 9366847 ~ 9388557 (+)
G82666 NA non-coding upstream 46027 9381055 ~ 9384143 (+)
G82659 NA non-coding upstream 57996 9370508 ~ 9372174 (+)
G82639 NA non-coding upstream 190585 9239381 ~ 9239585 (+)
G83958 NA non-coding downstream 119031 9563054 ~ 9563353 (+)
G84005 NA non-coding downstream 157753 9601611 ~ 9602235 (+)
G84023 NA non-coding downstream 215284 9659307 ~ 9659737 (+)
G84046 NA non-coding downstream 307588 9751611 ~ 9751958 (+)
G84134 NA non-coding downstream 361763 9805786 ~ 9805985 (+)
G82581 NA other upstream 95222 9329329 ~ 9334948 (+)
G82168 NA other upstream 1388827 8028338 ~ 8041343 (+)
G81994 NA other upstream 2091931 7335945 ~ 7338239 (+)
CI01000013_06076169_06080164 NA other upstream 3347803 6075400 ~ 6081684 (+)
CI01000013_06050285_06059640 NA other upstream 3370674 6049864 ~ 6060269 (+)
G84194 NA other downstream 586585 10030608 ~ 10036953 (+)
G84215 NA other downstream 632431 10076454 ~ 10079336 (+)
G84250 NA other downstream 771104 10215127 ~ 10215962 (+)
CI01000013_10756927_10790192 FRMD4A other downstream 1328263 10756927 ~ 10792761 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013267 rbm28 coding NC_007129.7 CM002902.2 10692945 ~ 10713414 (-)