G302991 (ub2r1,LOC108280790,LOC108433104,LOC105020474)


Basic Information

Item Value
gene id G302991
gene name ub2r1,LOC108280790,LOC108433104,LOC105020474
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172835.1
NCBI id APWO02000053.1
chromosome length 1257710
location 380947 ~ 400259 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417197
ggccaacaaaccataaaaatacatacaggtcAGTAAAATGATCAGCATCGAGGTTTAATATCGTAAACCGCTGCCGCAACCGCCGAGAACAAAACTGAAGGACTGGTTAACTCGCTGTTCACGATGAGAAGGGGGGTCGAGGGTGTCGGGTCGGAGTTGCAGGGGGAGATTTTGAGGGCTTTGCCCTCTGGTTGGTTTATCCTGAGAGTCAGTTAAAACGAGCTCACGCCGAACTGGCTGGAAATGGTGGAATGCTGATGATTTGAAAGCCGTCTCCAGTCTCCAGAAGCTCGAAGACGTGAAATAAACTACAGGGTTTGATGCCGACGCTGCCGTCATTTTACTGAGCGAAAGATTCcaacaaaaatcaaaaacacatgAGCATTCGTAAGTCCAGGAGGATCACCCAGAAAGCCCCAAAACGAGGAAATTTTTACGTCGCCGTCTTCGAAAGAAAAAACGgggaaagaaacaaacaaacaaaaaaaaaaaagtacattctCTATTAAAATAGCTAGGAGCCAAATAATTGAAATTCGTGAGAGGACGATACAATATTGGCGAAACTCAAAACATTTCAGCtgaacgagaaaaaaaaaaaaaaagacaaatcaaTCAGTGAACACCCTACTACCTACCCTTTAAGTCTTTATGGAGCGCACCTTTAGAAACGAATGCAGTACACCcaacattgtgattaaaaaaaaaaaaaagctttgaagAAGAACATCTGCCTGGATCTGTACGGTGCGTCCTGGGCGCTGTGGTAGGTGGAGGCCTCTAGTGGAgagctccagtaacacacacacacacacacacagcgtagAGACTACATACGTGAAGCTCACGTCTGAGAGCAAGTATATCTCTAGCCTTGAAATCTCTGCACAAACCTAATTCACGGCTGCgttccaaagcctaggctgcagTCAAGGTAGGGGGCGAGTCCAAGGTGGCACTACTGTCCTATTGAGACTCCCTCTCAGTAGTTCTCAGTAGCCTGTTGGTTGCACATCTGAAACAGTCTAACAAggatttatttgtaatattaataatttaaaaataaataaaaaatattttaaaagcaacTCCAAACTCCCTAATTTTCTtggtgctctttttttttccacaccttCGTATTATATAAGTTTTAACTCCCACCATTTTTTTAAGAAGGGGTTTCTACTCTTGAGGCTTAGCTTTCAGCTATTTTTTTCCACACCGCTGCTTTCCTTTTTCACCCTctttgtgctgtgtgtgagcagagaattgtgggtaaaaacacacaaagcacatgaaggatacatcagctgcgacCTCAGCATCACTGCGAACGTCGACTGCACTTCTTCTCAACTCTACGCGAAGGGTCCTTCACTTTAGAGCAGCTCTCTAGGACATAGAGGAGAAATGAGCAAGGCAGATTTTGCCTGGGCTTTAGACACAGCTCTATTCAgggaggaaaaataaaacaaagaatacAAGTCCATTTAAAGCATCCCATCAGAATCCTAATTCTTCCACATTGGGAAAATAGTTTGGGAGCTCAAAGAACTGTGTTCGACCAAGAACGCCACAATCTAAAAAGGCCCTCCAAGACCAGGACTGAGGTCACAATCctgcagacattttttttattttaaagccacaTCTCTGAAGCAAAAACCAggtaaaactgcattttattgtattttcctGCTCCCCATCTGACCTGCTACAgctccacaaacacacaaaaaactgtGTTCTAGCTGTTCCAAGCTTTACAGAACCAACGACTGAGCTCCATTCcaaacacaactcaacacaacaaAGGGTTTTTTTAAGGAATGTGTTCGGGCGTGTTCACACTAATCCAGTTTGGTCCAacccaaaatagcaggtgtgaacaTAACCACGAACTTAAGTCCTAAACAAAAGGGCTGATTCAGACcagttacaggaagttgagtcaCAGGATATCGTCACCTATTAAACATCACAGAAGAAGATAAAAGAAGAGGTGTTGTGACAAAATTGGTCTccagcagtacgggtacaacagatcaCAGTTCTGTTGACTCTGTTTCTACTGTAAacgtagattaacccttatttctAAAGTAATCCGAGTGGAATCTGTTCCTCTCATTCTTTCATACTCGAAGCGAGACAGATTCTGGCATGTGGGCAGAATTCCACACAACACCTGAAAAGGTGACTCTCTATGCTGACAATGTAACCCAACAGGTTTGACCATCACTTCCAAGGTTGTATGACACGAATAGATGATAGAAATGATGATAAACTGCATGTTTTATTAACGTGTGGGGCAGCCATCTTGAATTCTGATCTTAGGGTTTGGTgcctttaaagttttaaaactgGTGAAGAGATTCCAGTTTAAATGATGTACTCAAAAtcggccctgctccctccgggtgggtagatggcgctctctctttccccacatcactcctagggtgatgtccacagcacagggcgtctgtgagctgatgtatcagaacagagtcacGGCTCTTTCCTCTAAGCGCGCTgagatgctgctcggcaatgctgcatgaattcacatgtatcggaggaggcatgtgttagtcttcaccctcctggtgtgttggggcatcactagtgatagggggagtcgtAATGAGTGGGTTTGGGTAATtagctgtgctaaattgggaaattttttaaataaaaataaaagttatgtACGCTGAACATTTGGGACAGAAGGCCACGACATTCTTTATGTAATTTTTGCAAGCTAAAGTTCTGTAAAGCTTGTCCAACTTAGCAACAGTTGCtataaaagaacattttattaatGGGCGGAGCATAGAGAgatcaattaaattaattaagtctGAGAAGAGGAAACTGGATGAACAGAAAACTAGAACTAACTTACCTAACTCAAAAAAGCCACAGAGGGAATAATCagaatcaaattaaatatacaaaaaaaaaaataaatcattcctTTCATTCAAGCGCTAGTAAATCACCATTCCATAGTAATATTCATTAAAACAGTCAagcaaccatccatccatccatccatctgttcatccatccattcattaattcattcattcatgtgtCTGAGAAAGCAGGAGGTGTCTGGATTTCTGAAGCACaaaaaagggggaaataaaaCGTTTAAAATGAACCCTCATGAAACCGCAATGAATTTAAAAGcttatggggaaaaaaaacaaaaaaaaaaacaaagcgagaaaaaagtgagaaaataattaattttccaGCTATTAATcaaccaaaaacaaaattaaccaccaaaaaaaaaagaaacatcatATTTTATAGTTCCTTTAAGGATAAACGaaccaaacaaaacagaacaaatccAACAAAAACAGCTATCCAAGTGAAATGAATACATGCGACAGCTTTTCAACTCTTTTCAGGGTGAAGATGAAGAGGAGGCGGGCGAGACGAGGAGGACGTGGGTGGTGCCGATGACGCCGCGGCGGTGTCACGACTCCTCGTTTCCTGAGTCGTCCTCGTCGTAGCAACAGTCCTCGTCGTTATCGTCCTCCAAGTCCTCGTCGTCATAGTAATCGTCGTAAAACAAGTCGGAGCCCTCGTCGGTGGGCGGGGCGCGCGTGCGGACGCAGTATTCCGCCAGCGTGGTGGGAACCTTTACACCGTCCCGCTCTGCTTCTGCTTTAGTGGCCAGAACCTGCttcCGAATGATCTCTGCGTACTCCCGGTCCTTCCCCTTGCTGTCTCTCCATTTGCGGTACATGACTGAGGCGTCCACGTTAGCGGGAGAGAAAGTGTTCGGCTCGTTCAGCAACGATATGACACTCAGCAGAATAGTcCTGACGTTCTGCGTGGGGTTCCACCGCTCTGAGGGCAGCTCTCCACTCTGAGGGTCGTCTACCGGAGGGTGAAGGATGGATATACACACATCGCCattctcataaATGTTGGGGTGCCACATCTTGGTGAGAAATCTGAAGGCCGGAGGGGAGTAGGGGTAGTCGATGGGGAACTTGATGCGTGCCTTAAAGTATCCCCCCTCGTACAGCGTGTTCGGGGGGCCGAATATGGCCACTTCCCAGTTGTACAGGTCCGCCTCGTCCACCAGTGTGATCTTGAAGCCCTCCACCGGCTCCTCCTGCAGGCTCTTCATCTCCAGCATCAGCGCCTTCTGGGAGCTGGCCACATGCGGGCCGCTGTGCTGGGCCATCCCCGCGGCGGTGAGCGGAGAACCGGTTaggtgtgagtgagagaggcgGGCTGGGGAACTGCCTGCCTGGgctcgctgctgctgctgctgttgctacTGGCTTTGTGTAAAAGCtaggctaaactaagctaagctaagctaaccctCAGCTACACAAACAAGCCTATTGTTTCTCTTAGCTTTAGCCTATCTTAGCCTGACAGCGGCTAAATCTATCTGACGCATAAACAGGCGAGCCTGGCTATAAACCTGAACACCGGCGCGGAGCCAGCGAGCTATCTCAATCCGCACAGGCCGAGCTCAGAGCTCCGAGCCCGGGCAGCCCGCGGCGGAGAGCAGGTCCGAGACCCGGACTGTTGAGCTGTAGACTCGGATCAGATCCCGGCCCAGAGCCGCTGTAACGTTAACTTACAGGACGCGGAGTCTCTCCGTGAGAGTTGCCGACTTAAACACAGGCCGCACAGCCCTGACACAGCCTCGCAGCGCGGATTATAACAGCGCACAGCGacttatttacacagaaaaaactACAAACTGCCACATCTCTGCCCGCACC

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417197 True 4775 lncRNA 0.46 5 380947 400259

Neighbor

gene id symbol gene type direction distance location
LOC103045831 abhd17aa,LOC108433103,LOC108280794,LOC105904035,LOC107757810,LOC107600230,LOC107599293,LOC107698472 coding downstream 4907 364570 ~ 376040 (-)
LOC103046750 NA coding downstream 310061 66206 ~ 70886 (-)
LOC111191239 NA coding downstream 321445 43903 ~ 59502 (-)
LOC111191238 NA coding downstream 349844 12863 ~ 31103 (-)
LOC111191234 NA coding upstream 48878 449137 ~ 465932 (-)
LOC103034629 prpf38b,LOC107660074 coding upstream 214205 614464 ~ 625347 (-)
LOC103035894 NA coding upstream 227483 627742 ~ 651800 (-)
LOC103035586 NA coding upstream 302248 702507 ~ 716273 (-)
G302990 NA non-coding downstream 5768 360874 ~ 375179 (-)
G303005 NA non-coding downstream 35325 345058 ~ 345622 (-)
G302995 NA non-coding downstream 69422 310070 ~ 311525 (-)
G302977 NA non-coding downstream 158040 222675 ~ 222907 (-)
G302974 NA non-coding downstream 163280 217381 ~ 217667 (-)
G302955 NA non-coding upstream 13702 413961 ~ 426599 (-)
G303014 NA non-coding upstream 32614 432873 ~ 433195 (-)
G303027 NA non-coding upstream 75107 475366 ~ 476739 (-)
G303123 NA non-coding upstream 161108 561367 ~ 562707 (-)
G303126 NA non-coding upstream 226078 626337 ~ 673252 (-)
LOC103041427 si:ch211-168n16.1,sema6b,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499 other downstream 28218 166359 ~ 352729 (-)
G302937 NA other downstream 320805 16646 ~ 60142 (-)
LOC103036855 wdr47,wdr47a,LOC108428282,LOC108261062,LOC107749106,LOC107730459 other upstream 803633 1203892 ~ 1246767 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005804 LOC106613805,LOC101170792,LOC103364385 coding CM030142.1 CM030142.1 10615882 ~ 10623009 (+)