Gene
RNA
| Item | Value |
|---|---|
| gene id | G84202 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 10123760 ~ 10127752 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: early endosome antigen 1 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU95781 | True | 3308 | lncRNA | 0.37 | 4 | 10123760 | 10127752 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_09681047_09683275 | LRRC4, LRRC4.2 | coding | upstream | 440327 | 9681047 ~ 9683433 (+) |
| CI01000013_09430170_09443518 | RBM28 | coding | upstream | 679737 | 9430170 ~ 9444023 (+) |
| CI01000013_09279917_09290301 | TSPAN33B | coding | upstream | 833000 | 9279917 ~ 9290760 (+) |
| CI01000013_09243644_09260619 | TSPAN9A, TSPAN9B, TSPAN9, TSN9 | coding | upstream | 863141 | 9243644 ~ 9260619 (+) |
| CI01000013_09178561_09180465 | NA | coding | upstream | 942603 | 9177107 ~ 9195268 (+) |
| CI01000013_10261599_10283287 | NA | coding | downstream | 132519 | 10260271 ~ 10283967 (+) |
| CI01000013_10335904_10336688 | NA | coding | downstream | 208152 | 10335904 ~ 10336896 (+) |
| CI01000013_10502138_10525511 | GRM3 | coding | downstream | 372938 | 10500690 ~ 10525674 (+) |
| CI01000013_10586449_10594082 | NA | coding | downstream | 458066 | 10585818 ~ 10594442 (+) |
| CI01000013_10756927_10790192 | FRMD4A | coding | downstream | 629175 | 10756927 ~ 10792761 (+) |
| G84242 | NA | non-coding | upstream | 5906 | 10117614 ~ 10117854 (+) |
| G84217 | NA | non-coding | upstream | 39711 | 10082294 ~ 10084049 (+) |
| G84216 | NA | non-coding | upstream | 42560 | 10079433 ~ 10081200 (+) |
| G84194 | NA | non-coding | upstream | 86807 | 10030608 ~ 10036953 (+) |
| G84181 | NA | non-coding | upstream | 203514 | 9920024 ~ 9920246 (+) |
| G84265 | NA | non-coding | downstream | 58781 | 10186533 ~ 10187657 (+) |
| G84289 | NA | non-coding | downstream | 125422 | 10253174 ~ 10254259 (+) |
| G84299 | NA | non-coding | downstream | 158259 | 10286011 ~ 10287310 (+) |
| G84304 | NA | non-coding | downstream | 209746 | 10337498 ~ 10339002 (+) |
| G84323 | NA | non-coding | downstream | 221108 | 10348860 ~ 10350255 (+) |
| G84215 | NA | other | upstream | 44424 | 10076454 ~ 10079336 (+) |
| G84005 | NA | other | upstream | 521525 | 9601611 ~ 9602235 (+) |
| G82581 | NA | other | upstream | 788812 | 9329329 ~ 9334948 (+) |
| G82168 | NA | other | upstream | 2082417 | 8028338 ~ 8041343 (+) |
| G84250 | NA | other | downstream | 87375 | 10215127 ~ 10215962 (+) |
| G84768 | NA | other | downstream | 2042237 | 12169989 ~ 12170818 (+) |
| G84790 | NA | other | downstream | 2057190 | 12184942 ~ 12201975 (+) |
| G84864 | NA | other | downstream | 2237297 | 12365049 ~ 12375905 (+) |
