G84250


Basic Information

Item Value
gene id G84250
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10215127 ~ 10215962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU95833
AGCGGTCCACTCCTCTAAAACAGGTTCTTTAGAAGAGACATTTATTTGAACAGCAGAATGCATGCCAGAAATGAATAATTTACAGCAGCATTTTCATGTCTTTGTCCCCCATTTCCAGTTCAGTCCTTTTCTGCCCAAGGTCCATCCAACAGAGCTGACCAATCAAGTTCATACTTTTAAGTTTTGCATTTGAAATCCTTTAGTTTACAGCGGTTTCCTGTTGGTTATATATTTAGCTACAATGGGAGAGAGTTTATCAGGCAGAAGTTATGCCTGTTGATAACACCATCTGTCATGAATAACAGAATATTTAAAGCACCACCTGGAATCCAACGCCAGACAAATCACTCATTAACAAGAACAGCTACTGTAAACGAGTATAGAAGTGAGTGGTGCTGTAAATTCACATGCAGTTTGTACACAGTGGCATATATTTTGGACCATTTTTTCATAAATAGTCTATATGTTCACAGCTACATTCAGATATACGTGTGCTGTAGGTGTGAGTGTATGCATGGTCTCAACAATAGGGGGCAAAAACGTCTAGCTAAAACTAATTCAGTGGGAGGGGTGAAAGTGGGACTTCTCAAGGAGTCAAGGAGCCTTGTCCCATGCTGTGTTCTGTCTCTGATCCCAGCAGTTTTAGTCACGCAGCTGTCCTTTCCTCAGCCGAGGGACAGGCACAGTATATTATATAACAGTTGTAAATTTGTCCTCCCTTGTCCTTGCATGTTTAAAGTCAACATAAAATCAAAATCAACCCTATTTACTTATGATTTACTTAATCATAATCAGTCCATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU95833 True 802 TUCP 0.40 2 10215127 10215962

Neighbor

gene id symbol gene type direction distance location
CI01000013_09681047_09683275 LRRC4, LRRC4.2 coding upstream 531694 9681047 ~ 9683433 (+)
CI01000013_09430170_09443518 RBM28 coding upstream 771104 9430170 ~ 9444023 (+)
CI01000013_09279917_09290301 TSPAN33B coding upstream 924367 9279917 ~ 9290760 (+)
CI01000013_09243644_09260619 TSPAN9A, TSPAN9B, TSPAN9, TSN9 coding upstream 954508 9243644 ~ 9260619 (+)
CI01000013_09178561_09180465 NA coding upstream 1033970 9177107 ~ 9195268 (+)
CI01000013_10261599_10283287 NA coding downstream 44309 10260271 ~ 10283967 (+)
CI01000013_10335904_10336688 NA coding downstream 119942 10335904 ~ 10336896 (+)
CI01000013_10502138_10525511 GRM3 coding downstream 284728 10500690 ~ 10525674 (+)
CI01000013_10586449_10594082 NA coding downstream 369856 10585818 ~ 10594442 (+)
CI01000013_10756927_10790192 FRMD4A coding downstream 540965 10756927 ~ 10792761 (+)
G84265 NA non-coding upstream 27470 10186533 ~ 10187657 (+)
G84202 NA non-coding upstream 87375 10123760 ~ 10127752 (+)
G84242 NA non-coding upstream 97273 10117614 ~ 10117854 (+)
G84217 NA non-coding upstream 131078 10082294 ~ 10084049 (+)
G84216 NA non-coding upstream 133927 10079433 ~ 10081200 (+)
G84289 NA non-coding downstream 37212 10253174 ~ 10254259 (+)
G84299 NA non-coding downstream 70049 10286011 ~ 10287310 (+)
G84304 NA non-coding downstream 121536 10337498 ~ 10339002 (+)
G84323 NA non-coding downstream 132898 10348860 ~ 10350255 (+)
G84324 NA non-coding downstream 138721 10354683 ~ 10356731 (+)
G84215 NA other upstream 135791 10076454 ~ 10079336 (+)
G84194 NA other upstream 178334 10030608 ~ 10036953 (+)
G84005 NA other upstream 612892 9601611 ~ 9602235 (+)
G82581 NA other upstream 880179 9329329 ~ 9334948 (+)
G82168 NA other upstream 2173784 8028338 ~ 8041343 (+)
G84768 NA other downstream 1954027 12169989 ~ 12170818 (+)
G84790 NA other downstream 1968980 12184942 ~ 12201975 (+)
G84864 NA other downstream 2149087 12365049 ~ 12375905 (+)

Expression


Co-expression Network