G308178


Basic Information

Item Value
gene id G308178
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 680650 ~ 680889 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424294
aaaaacgggccaaagagtctaaaagcggagagagtgcgtatttctagcacagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagtggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424294 True 240 lncRNA 0.49 1 680650 680889

Neighbor

gene id symbol gene type direction distance location
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding downstream 102586 783475 ~ 841687 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding downstream 178159 859048 ~ 887291 (+)
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding downstream 213971 894860 ~ 1072523 (+)
relt relt coding downstream 403544 1084433 ~ 1155289 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding downstream 498668 1179557 ~ 1333842 (+)
G308170 NA non-coding upstream 6325 616288 ~ 674325 (+)
G308168 NA non-coding upstream 65731 614624 ~ 614919 (+)
G308156 NA non-coding upstream 101755 567535 ~ 578895 (+)
G308124 NA non-coding upstream 281376 398957 ~ 399274 (+)
G308113 NA non-coding upstream 367874 309971 ~ 312776 (+)
G308194 NA non-coding downstream 103323 784212 ~ 785102 (+)
G308187 NA non-coding downstream 111955 792844 ~ 923218 (+)
G308200 NA non-coding downstream 155879 836768 ~ 837228 (+)
G308215 NA non-coding downstream 260278 941167 ~ 941932 (+)
G308218 NA non-coding downstream 272612 953501 ~ 956767 (+)
G308090 NA other upstream 494575 185337 ~ 186075 (+)
serp1 NA other downstream 1147015 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 1336575 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 1450190 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1639002 2319891 ~ 2338166 (+)
G308680 NA other downstream 1875438 2556327 ~ 2556569 (+)

Expression


Co-expression Network