G308223


Basic Information

Item Value
gene id G308223
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1012427 ~ 1014227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424347
CAGTGAGAATGTCTACCTGTATATAACTCGATATAACATTTAGAAAAAACcctacctgtaataaactctatacaACATTAGAGTAAACCTTACAttgaattaactctatataacattagaataagcCTAAATAAATATAGTCAAAAGTCAGAGAgaatgtctacctgtaattaactctatctaacattagaatactaaacccaaataaacatggtCATTGATCAGtaagtgtctacctgtaattatctctatataacattagaataaacctaacctgtaattaactctatataacattagaaaaaaacccaaccagtaattaactctatataacattagaatactaaacccaaattaaCATGTTCAGTGATCAGtaagtgtctacctgtaattaactctatataacattagaataaacctaacctgtaattaattctatataacattagaataaacccaacctgtaattaactctatataacattagtgTAAACCCAAATTAACACAGCCAGTGAACAGTAAGTGTCTACctataattaactctatataacattagaataaccAAAAAAACCCATCTGATTGTGTTAAATATCCCTAAAATATCCTGTATAACTCTGGTCactgagagtgtctacctgtaattaactctatataacattagaataataaacccaaatacaCGTTATTGACTGCTTTACATTGTCCAATTTGCATTATTGCAACAGTGTATCAGACAGTGaatgtttattatataatagtGTTATATAGTTACCTCCCTCAGGAGATAATGGTGTGATGGAGGGATGTTGGAGAAAGTGCTCAGTGAAAGAGTGACGTAGATCTGAGTTATTCTTGTCTgtcttctttcattcttttgatttcttttccactcttttttttttcttctctactTCGTGTACTCTGCCCCCCTCTCCCTCCTCCCTGCCAGTATTCCCCTCTGGCACAGCATTGCTGCTCTCTGGTCTGAGACCAGCTTTCAGAGGCCCTCATTAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424347 True 1017 lncRNA 0.33 3 1012427 1014227

Neighbor

gene id symbol gene type direction distance location
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 125136 859048 ~ 887291 (+)
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding upstream 170740 783475 ~ 841687 (+)
relt relt coding downstream 70206 1084433 ~ 1155289 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding downstream 165330 1179557 ~ 1333842 (+)
LOC103036707 NA coding downstream 326240 1340467 ~ 1352751 (+)
rps3 rps3,LOC102795110 coding downstream 339535 1353762 ~ 1361925 (+)
kctd14 kctd14 coding downstream 349487 1363714 ~ 1366089 (+)
G308222 NA non-coding upstream 20794 991095 ~ 991633 (+)
G308218 NA non-coding upstream 55660 953501 ~ 956767 (+)
G308215 NA non-coding upstream 70495 941167 ~ 941932 (+)
G308187 NA non-coding upstream 89209 792844 ~ 923218 (+)
G308200 NA non-coding upstream 175199 836768 ~ 837228 (+)
G308185 NA non-coding downstream 60074 1074301 ~ 1126340 (+)
G308192 NA non-coding downstream 89532 1103759 ~ 1160735 (+)
G308228 NA non-coding downstream 90868 1105095 ~ 1106153 (+)
G308190 NA non-coding downstream 115313 1129540 ~ 1159266 (+)
G308307 NA non-coding downstream 181349 1195576 ~ 1225465 (+)
G308090 NA other upstream 826352 185337 ~ 186075 (+)
serp1 NA other downstream 813677 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 1003237 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 1116852 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1305664 2319891 ~ 2338166 (+)
G308680 NA other downstream 1542100 2556327 ~ 2556569 (+)

Expression


Co-expression Network