fam168a (fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757)


Basic Information

Item Value
gene id fam168a
gene name fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 783475 ~ 841687 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665971.1
tctctctctctctcttgtattTTCATCCTGCCTgcgtaaaaaaggaaagagcagcagcagcagcagcagtcagaCTGCCGGATCTACAGCTACATAAAGCCTTCAGACCCGGAGCTACAAAGAAACCAGAGGCATCTAAACACCCAGGATCTGCCCAAACTGatttgcatatccattcctcctcctccctccttcATTTCCCTTTCCTTCCTTGAGAATGGCAGGCGGACCCCCCACTGACAAATACAGTTTTCTCTACCAGACAGACAGCAGCCACTTAAAGAGtaAGAGCAGACTGTCTTCCACCATGAATCCGATCTACAGTCCCGTTCAGCCTGGGACTCAATATGGAAACCCCAAGAACATGGCCTACGCAGGTTACCCAGGAGGTTATCCCACCGCTGCCCCCGCCTACACACCCAGCCTGTACCAGACGGGCAGCCCAGGGTATCCTCCagTGGTGCTGGTGAAGCAGGGCTGGCCCCAGACGGTGTCGGCCCCGGGGCCCGCTGAAGGCTCCTTTGACCTGGCCATGGACGCGGGCTCAGAGAGCAGGCAATTCCAGGCCTCGTCTACTGCATTCAgATACACTGCAGGTACCCCCTACAAAGTGCCCCCAGCACAGACTAATGGAGCCCCCCCGCCATACTCCCCCTCTCCAAACCCTTACCCCACGGCCATGTACCCCATCCGAAGTGCCTACCCTCAACAGAACCTCTACGCTCAGGGAGCTTATTACACACAGCCGGTGTACGCTGCCCAGCCGCACGTCATCCACCACACCACGGTGGTGCAGCCCAACAGCATCCCCTCCGCCATCTACCCCGCCCCCGTCGCCGCCCCCCGCCCCAACGGAGTGGCCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGCACACTGTTGACCACGCCTCAACACACTCCCATTGGACCACACCCCGTTACCGTGCCAACGTATCGTCCCCAAGGAACGCCTGGGTACAGCTACGTGCCACCTCACTGGTAGAGCCCGCCTACCAATCATATCTGGAGTTGAACATCGTATGCAACTACTCAAGTCTTACATTGGCGCTCTGTGATCAGCAGGGGACCACGTCTGTTTGCaagaacaaaaggaaaaaaaagggtCACTTTATGCATTCTTACGTGTTTTTGTAAAAGCtgcttttttaagttttatttaaaatgagtatttctttttcctctcgtgttttttgtcttatatcttttcttttttc
>XM_022665972.1
tctctctctctctcttgtattTTCATCCTGCCTgcgtaaaaaaggaaagagcagcagcagcagcagcagtcagaCTGCCGGATCTACAGCTACATAAAGCCTTCAGACCCGGAGCTACAAAGAAACCAGAGGCATCTAAACACCCAGGATCTGCCCAAACTGGCGGACCCCCCACTGACAAATACAGTTTTCTCTACCAGACAGACAGCAGCCACTTAAAGAGtaAGAGCAGACTGTCTTCCACCATGAATCCGATCTACAGTCCCGTTCAGCCTGGGACTCAATATGGAAACCCCAAGAACATGGCCTACGCAGGTTACCCAGGAGGTTATCCCACCGCTGCCCCCGCCTACACACCCAGCCTGTACCAGACGGGCAGCCCAGGGTATCCTCCagTGGTGCTGGTGAAGCAGGGCTGGCCCCAGACGGTGTCGGCCCCGGGGCCCGCTGAAGGCTCCTTTGACCTGGCCATGGACGCGGGCTCAGAGAGCAGGCAATTCCAGGCCTCGTCTACTGCATTCAgATACACTGCAGGTACCCCCTACAAAGTGCCCCCAGCACAGACTAATGGAGCCCCCCCGCCATACTCCCCCTCTCCAAACCCTTACCCCACGGCCATGTACCCCATCCGAAGTGCCTACCCTCAACAGAACCTCTACGCTCAGGGAGCTTATTACACACAGCCGGTGTACGCTGCCCAGCCGCACGTCATCCACCACACCACGGTGGTGCAGCCCAACAGCATCCCCTCCGCCATCTACCCCGCCCCCGTCGCCGCCCCCCGCCCCAACGGAGTGGCCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGCACACTGTTGACCACGCCTCAACACACTCCCATTGGACCACACCCCGTTACCGTGCCAACGTATCGTCCCCAAGGAACGCCTGGGTACAGCTACGTGCCACCTCACTGGTAGAGCCCGCCTACCAATCATATCTGGAGTTGAACATCGTATGCAACTACTCAAGTCTTACATTGGCGCTCTGTGATCAGCAGGGGACCACGTCTGTTTGCaagaacaaaaggaaaaaaaagggtCACTTTATGCATTCTTACGTGTTTTTGTAAAAGCtgcttttttaagttttatttaaaatgagtatttctttttcctctcgtgttttttgtcttatatcttttcttttttc
>XM_022665973.1
tctctctctctctcttgtattTTCATCCTGCCTgcgtaaaaaaggaaagagcagcagcagcagcagcagtcagaCTGCCGGATCTACAGCTACATAAAGCCTTCAGACCCGGAGCTACAAAGAAACCAGAGGCATCTAAACACCCAGGATCTGCCCAAACTGtaAGAGCAGACTGTCTTCCACCATGAATCCGATCTACAGTCCCGTTCAGCCTGGGACTCAATATGGAAACCCCAAGAACATGGCCTACGCAGGTTACCCAGGAGGTTATCCCACCGCTGCCCCCGCCTACACACCCAGCCTGTACCAGACGGGCAGCCCAGGGTATCCTCCagTGGTGCTGGTGAAGCAGGGCTGGCCCCAGACGGTGTCGGCCCCGGGGCCCGCTGAAGGCTCCTTTGACCTGGCCATGGACGCGGGCTCAGAGAGCAGGCAATTCCAGGCCTCGTCTACTGCATTCAgATACACTGCAGGTACCCCCTACAAAGTGCCCCCAGCACAGACTAATGGAGCCCCCCCGCCATACTCCCCCTCTCCAAACCCTTACCCCACGGCCATGTACCCCATCCGAAGTGCCTACCCTCAACAGAACCTCTACGCTCAGGGAGCTTATTACACACAGCCGGTGTACGCTGCCCAGCCGCACGTCATCCACCACACCACGGTGGTGCAGCCCAACAGCATCCCCTCCGCCATCTACCCCGCCCCCGTCGCCGCCCCCCGCCCCAACGGAGTGGCCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGCACACTGTTGACCACGCCTCAACACACTCCCATTGGACCACACCCCGTTACCGTGCCAACGTATCGTCCCCAAGGAACGCCTGGGTACAGCTACGTGCCACCTCACTGGTAGAGCCCGCCTACCAATCATATCTGGAGTTGAACATCGTATGCAACTACTCAAGTCTTACATTGGCGCTCTGTGATCAGCAGGGGACCACGTCTGTTTGCaagaacaaaaggaaaaaaaagggtCACTTTATGCATTCTTACGTGTTTTTGTAAAAGCtgcttttttaagttttatttaaaatgagtatttctttttcctctcgtgttttttgtcttatatcttttcttttttc
>XM_022665974.1
tctctctctctctcttgtattTTCATCCTGCCTgcgtaaaaaaggaaagagcagcagcagcagcagcagtcagaCTGCCGGATCTACAGCTACATAAAGCCTTCAGACCCGGAGCTACAAAGAAACCAGAGGCATCTAAACACCCAGGATCTGCCCAAACTGACAGACAGCAGCCACTTAAAGAGtaAGAGCAGACTGTCTTCCACCATGAATCCGATCTACAGTCCCGTTCAGCCTGGGACTCAATATGGAAACCCCAAGAACATGGCCTACGCAGGTTACCCAGGAGGTTATCCCACCGCTGCCCCCGCCTACACACCCAGCCTGTACCAGACGGGCAGCCCAGGGTATCCTCCagTGGTGCTGGTGAAGCAGGGCTGGCCCCAGACGGTGTCGGCCCCGGGGCCCGCTGAAGGCTCCTTTGACCTGGCCATGGACGCGGGCTCAGAGAGCAGGCAATTCCAGGCCTCGTCTACTGCATTCAgATACACTGCAGGTACCCCCTACAAAGTGCCCCCAGCACAGACTAATGGAGCCCCCCCGCCATACTCCCCCTCTCCAAACCCTTACCCCACGGCCATGTACCCCATCCGAAGTGCCTACCCTCAACAGAACCTCTACGCTCAGGGAGCTTATTACACACAGCCGGTGTACGCTGCCCAGCCGCACGTCATCCACCACACCACGGTGGTGCAGCCCAACAGCATCCCCTCCGCCATCTACCCCGCCCCCGTCGCCGCCCCCCGCCCCAACGGAGTGGCCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGCACACTGTTGACCACGCCTCAACACACTCCCATTGGACCACACCCCGTTACCGTGCCAACGTATCGTCCCCAAGGAACGCCTGGGTACAGCTACGTGCCACCTCACTGGTAGAGCCCGCCTACCAATCATATCTGGAGTTGAACATCGTATGCAACTACTCAAGTCTTACATTGGCGCTCTGTGATCAGCAGGGGACCACGTCTGTTTGCaagaacaaaaggaaaaaaaagggtCACTTTATGCATTCTTACGTGTTTTTGTAAAAGCtgcttttttaagttttatttaaaatgagtatttctttttcctctcgtgttttttgtcttatatcttttcttttttc
>XM_022665975.1
tctctctctctctcttgtattTTCATCCTGCCTgcgtaaaaaaggaaagagcagcagcagcagcagcagtcagaCTGCCGGATCTACAGCTACATAAAGCCTTCAGACCCGGAGCTACAAAGAAACCAGAGGCATCTAAACACCCAGGATCTGCCCAAACTGatttgcatatccattcctcctcctccctccttcATTTCCCTTTCCTTCCTTGAGAATGGCAGGCGGACCCCCCACTGACAAATACAGTTTTCTCTACCAGACAGACAGCAGCCACTTAAAGAGtaAGAGCAGACTGTCTTCCACCATGAATCCGATCTACAGTCCCGTTCAGCCTGGGACTCAATATGGAAACCCCAAGAACATGGCCTACGCAGGTTACCCAGGAGGTTATCCCACCGCTGCCCCCGCCTACACACCCAGCCTGTACCAGACGGGCAGCCCAGGGTATCCTCCaggATACACTGCAGGTACCCCCTACAAAGTGCCCCCAGCACAGACTAATGGAGCCCCCCCGCCATACTCCCCCTCTCCAAACCCTTACCCCACGGCCATGTACCCCATCCGAAGTGCCTACCCTCAACAGAACCTCTACGCTCAGGGAGCTTATTACACACAGCCGGTGTACGCTGCCCAGCCGCACGTCATCCACCACACCACGGTGGTGCAGCCCAACAGCATCCCCTCCGCCATCTACCCCGCCCCCGTCGCCGCCCCCCGCCCCAACGGAGTGGCCATGGGCATGGTGGCAGGAACCACGATGGCCATGTCTGCAGGCACACTGTTGACCACGCCTCAACACACTCCCATTGGACCACACCCCGTTACCGTGCCAACGTATCGTCCCCAAGGAACGCCTGGGTACAGCTACGTGCCACCTCACTGGTAGAGCCCGCCTACCAATCATATCTGGAGTTGAACATCGTATGCAACTACTCAAGTCTTACATTGGCGCTCTGTGATCAGCAGGGGACCACGTCTGTTTGCaagaacaaaaggaaaaaaaagggtCACTTTATGCATTCTTACGTGTTTTTGTAAAAGCtgcttttttaagttttatttaaaatgagtatttctttttcctctcgtgttttttgtcttatatcttttcttttttc

Function

symbol description
fam168a Predicted to be involved in positive regulation of base-excision repair. Orthologous to human FAM168A (family with sequence similarity 168 member A).

NR:

description
PREDICTED: protein FAM168A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665971.1 True 1247 mRNA 0.54 9 783475 841687
XM_022665972.1 False 1185 mRNA 0.55 9 783475 841687
XM_022665973.1 False 1124 mRNA 0.55 8 783475 841687
XM_022665974.1 False 1147 mRNA 0.55 9 783475 841687
XM_022665975.1 False 1121 mRNA 0.53 8 783475 841687

Neighbor

gene id symbol gene type direction distance location
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding downstream 17361 859048 ~ 887291 (+)
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding downstream 53173 894860 ~ 1072523 (+)
relt relt coding downstream 242746 1084433 ~ 1155289 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding downstream 337870 1179557 ~ 1333842 (+)
LOC103036707 NA coding downstream 498780 1340467 ~ 1352751 (+)
G308178 NA non-coding upstream 102586 680650 ~ 680889 (+)
G308170 NA non-coding upstream 109150 616288 ~ 674325 (+)
G308168 NA non-coding upstream 168556 614624 ~ 614919 (+)
G308156 NA non-coding upstream 204580 567535 ~ 578895 (+)
G308124 NA non-coding upstream 384201 398957 ~ 399274 (+)
G308215 NA non-coding downstream 99480 941167 ~ 941932 (+)
G308218 NA non-coding downstream 111814 953501 ~ 956767 (+)
G308222 NA non-coding downstream 149408 991095 ~ 991633 (+)
G308223 NA non-coding downstream 170740 1012427 ~ 1014227 (+)
G308185 NA non-coding downstream 232614 1074301 ~ 1126340 (+)
G308090 NA other upstream 597400 185337 ~ 186075 (+)
serp1 NA other downstream 986217 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 1175777 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 1289392 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1478204 2319891 ~ 2338166 (+)
G308680 NA other downstream 1714640 2556327 ~ 2556569 (+)

Expression


Co-expression Network