G316831 (ube2i,ube2ia,LOC107677193,LOC105013396)


Basic Information

Item Value
gene id G316831
gene name ube2i,ube2ia,LOC107677193,LOC105013396
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172875.1
NCBI id APWO02000072.1
chromosome length 1838760
location 1531156 ~ 1554229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU436100
ataaacatttttatttactctAAACACTTACATGAACAAAAACACCATATAAACACAGATTGATGCAGCGACACTAACCCGCCTTCCGGTTTTGATTCAGAggccttttttcttcttttttctgttttttttttcttcttcttcttcttcgcaGAACATATTTAGTTGGCCAAGGCAGCACAATGCTATCATACTTTATATTACAACATGCTGTCTACACTGCCTGCACCAGGAATGGAAAGTTCTATAGATAGACACTAATTCAAAATCaagaaagtataaaagtatCATTTTACAGCAGTTGAAATACTGACATTTAAGTAATAGCGAGTCattaaacatcattaaaaccATGGAAGAGTCTAAAGGAGGAGGCCGGTCTGAACGGATGAAACTGAAAGCaaggaaaatgaaaggaaagaAGAGGAAAAGGAAGGAAAAGAAAGGAGTTAAATGCTCATACCGTCTTCTTTGTTGTGCGGTATATAACTTCTACGCATACGGATTATTTTCGAGTCGATCTGTAACTCCAGAGCGAAACGGAGAAGCCGCAGTATGTGGTTTTCCCAGCTTCAACATGCCGAATTCATTTCATCAGCTAATTATCAAGCCCCTCATGAATCCGGCAGGCTGGAGAAGGGAAGACACAGAACCATGCAGACTTGTGACTCCCTAAAATTGGAGTCGGGCGCTCCCGGTACGAGCGCCTGTGCTGCAAATTAGCTTCAATAGGGGGCATCTGTGACACTCCTGCCTCtttcacaaataaaataaaaagccaaATTAAGAGCCAGAGAGCTTCGTTAGATGAGTGTCACTGGACAGACGATGGCACAACACATTCAGTTTTCTTTAAACTCAGGTGGAAATTAGTGTGAAATGAAATCGGGGTTAAGAGGGGGAGCCGAGGGGGGCTGCAGGGACCTTTTCAAAACTCAATCTTTCCATCGCGACAAAATCTGGAGGCTTACGGAGAAAACTTTTTGGCTTGTGCTCGGACCCTTTTTTCGTATTCCACTCTGTTTTGGCAGTAAATTGTATATGCCTCAGCTTGTGCGGGGTCCTGAATATTTGGCTCGTTTAGGAGTTCTTGGATTCCTAGCAAGATTTGCTTGATCGTGATAGCCGGCCTCCAGTCTTTGTCTTCCTCTAAAATCGATAGGCACACGGTGCCAGATGGATATACGTTGGGATGGAACAGGGGAGGCTCAAATTTACACTTTGGCGGGGAGGAAGGATAATCGTCCTTAAAGAGCATTCGCAGTTTAAACAAGCCTCCCTCCCAGGGCGTCCCCTTTTTTCCAGGGATGGCACACTCCCAATTCATCAGGTTCATTGTTCCATCCGGGTTTTTGGTCGGCACGGCTACAAAACcAAAAGGATGGTCTTTCCGCCAGGCCTTTCGTTCTTGTGCGAGACGACTTAACGCTATACCAGACATGACTTCAGGTTCCTTAAAATGATggagaaaaacCCTGGACCAGATAAAAATGTCTGGAGTCTTTTCTCGCCAATTCCGGGCTTTTCTGGGGGCTAACAGACGCCAAACTGAACAATTTCTTGCTAAATAACGAGCCGGACAGCGAAGTTTCCCTCCTGTAAAAACACTGGACACACAGGACCGCTGAGGGGCGACCGAGGCGCCTGATTAAAAATACCGCTACCTCTGATGCTGGATGCAGC

Function

symbol description
ube2ia Predicted to enable SUMO conjugating enzyme activity. Acts upstream of or within definitive hemopoiesis; embryonic heart tube elongation; and heart looping. Predicted to be active in nucleus. Orthologous to human UBE2I (ubiquitin conjugating enzyme E2 I).
ube2i Enables several functions, including RING-like zinc finger domain binding activity; SUMO conjugating enzyme activity; and small protein activating enzyme binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of SUMO transferase activity; and protein sumoylation. Located in PML body and cytoplasm. Part of sumoylated E2 ligase complex and transferase complex. Biomarker of dilated cardiomyopathy; ovarian cancer; and urinary bladder cancer.

NR:

description
PREDICTED: SUMO-conjugating enzyme UBC9 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436100 True 1683 TUCP 0.44 7 1531156 1554229

Neighbor

gene id symbol gene type direction distance location
LOC103036841 h3f3b,H3F3A,LOC105909691,LOC107388308,LOC107572204,LOC101073377 coding upstream 409143 1117493 ~ 1122013 (+)
cunh16orf71 NA coding upstream 481651 1042291 ~ 1049505 (+)
igfals igfals,LOC108257360 coding upstream 497382 1031629 ~ 1033774 (+)
LOC103030215 LOC108440240,LOC107703332,LOC107572172 coding upstream 732213 699696 ~ 798943 (+)
LOC111191514 NA coding upstream 1096711 424743 ~ 434445 (+)
il21r NA coding downstream 1283 1555512 ~ 1586211 (+)
LOC103026975 NA coding downstream 44778 1599007 ~ 1620518 (+)
LOC103022926 pdpk1,LOC108433157,LOC108257355,LOC100380750 coding downstream 70834 1625063 ~ 1658808 (+)
usp31 usp31,LOC107674671,LOC107565772 coding downstream 160759 1714988 ~ 1751977 (+)
G316804 NA non-coding upstream 92692 1438206 ~ 1438464 (+)
G316796 NA non-coding upstream 161821 1367829 ~ 1369335 (+)
G316795 NA non-coding upstream 173255 1357660 ~ 1357901 (+)
G316793 NA non-coding upstream 192076 1331250 ~ 1339080 (+)
G316780 NA non-coding upstream 334836 1194945 ~ 1196320 (+)
G316838 NA non-coding downstream 3521 1557750 ~ 1558121 (+)
snrnp25 snrnp25,LOC107703331,LOC107674670 other upstream 1107680 414365 ~ 423476 (+)
G316472 NA other upstream 1339062 145399 ~ 192094 (+)
kctd5 kctd5a,kctd5,LOC108433156,LOC107719174,LOC107703376,LOC107741791,LOC107565771,LOC105013398,LOC106601103,LOC106607354 other downstream 116976 1671205 ~ 1695585 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_01236373_01241067 UBE2I coding CI01000046 null 1235992 ~ 1241067 (-)
striped catfish (Pangasianodon hypophthalmus) ube2ia ube2i,ube2ia,LOC105013396 misc NC_047617.1 CM018563.1 17643888 ~ 17693603 (+)
bowfin (Amia calva) AMCG00018180 ube2i,LOC107677193 coding CM030135.1 CM030135.1 3949741 ~ 3956739 (+)