Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000016_00200989_00201760 |
| gene name | STMN1, STMN1A, STMN1B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 200721 ~ 202139 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| stmn1b | Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Is expressed in nervous system; neural crest; neural tube; and trigeminal placode. Orthologous to human STMN1 (stathmin 1). |
| stmn1a | Predicted to enable tubulin binding activity. Predicted to be involved in microtubule depolymerization; neuron projection development; and regulation of microtubule polymerization or depolymerization. Predicted to be active in cytoplasm and neuron projection. Is expressed in several structures, including digestive system; nervous system; pectoral fin bud; tail bud; and ventral mesoderm. Orthologous to human STMN1 (stathmin 1). |
| stmn1 | Enables tubulin binding activity. Involved in several processes, including establishment of skin barrier; negative regulation of signal transduction; and negative regulation of supramolecular fiber organization. Acts upstream of or within microtubule depolymerization and mitotic spindle organization. Located in extracellular exosome. Biomarker of hepatocellular carcinoma. |
| id | name | namespace |
|---|---|---|
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| K04381 | STMN1; stathmin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000016_00200989_00201760.mRNA | True | 1094 | mRNA | 0.41 | 4 | 200721 | 202139 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_00116237_00122376 | NA | coding | upstream | 76947 | 115163 ~ 123774 (+) |
| CI01000016_00104268_00104615 | NA | coding | upstream | 95672 | 100537 ~ 105049 (+) |
| CI01000016_00042281_00046080 | NA | coding | upstream | 154539 | 42244 ~ 46182 (+) |
| CI01000016_00206576_00207640 | PAQR7B | coding | downstream | 4437 | 206576 ~ 207935 (+) |
| CI01000016_00229474_00234707 | KCNV1 | coding | downstream | 27283 | 229422 ~ 234915 (+) |
| CI01000016_00294886_00298452 | NA | coding | downstream | 92747 | 294886 ~ 299161 (+) |
| CI01000016_00318676_00446341 | NA | coding | downstream | 116537 | 318676 ~ 446341 (+) |
| CI01000016_00496095_00506965 | NDUFAF6 | coding | downstream | 293956 | 496095 ~ 507033 (+) |
| G93143 | NA | non-coding | upstream | 13050 | 176999 ~ 187671 (+) |
| G93086 | NA | non-coding | upstream | 46041 | 153963 ~ 154680 (+) |
| G93133 | NA | non-coding | upstream | 70561 | 129313 ~ 130160 (+) |
| G93072 | NA | non-coding | upstream | 143785 | 56479 ~ 56936 (+) |
| G93071 | NA | non-coding | upstream | 172825 | 23660 ~ 27896 (+) |
| G93215 | NA | non-coding | downstream | 82061 | 284200 ~ 284433 (+) |
| G93216 | NA | non-coding | downstream | 82454 | 284593 ~ 284850 (+) |
| G93224 | NA | non-coding | downstream | 107150 | 309289 ~ 368179 (+) |
| G93157 | NA | non-coding | downstream | 248474 | 450613 ~ 457007 (+) |
| G93161 | NA | non-coding | downstream | 258301 | 460440 ~ 463979 (+) |
| G93406 | NA | other | downstream | 703261 | 905400 ~ 927532 (+) |
| G95439 | NA | other | downstream | 3660036 | 3862175 ~ 3862305 (+) |
| G95648 | NA | other | downstream | 4070497 | 4272636 ~ 4273905 (+) |
| CI01000016_04829592_04837305 | NA | other | downstream | 4632419 | 4829592 ~ 4837457 (+) |
| G95792 | NA | other | downstream | 5017741 | 5219880 ~ 5225941 (+) |
