CI01000016_00318676_00446341


Basic Information

Item Value
gene id CI01000016_00318676_00446341
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 318676 ~ 446341 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00318676_00446341.mRNA
ATGAGGGCGCATTTACGGAATCCCACTTTTTTCAGATTTCCTATGGCAAGTTTTTTAATAATTTTGATTGCTGTTTCTTTTGTGCATTCGACTGTCTTTTATGGACAAACTGAGGAAAACGCACCGCCTGGAACTGTTGTGGCTGGGTTTCTTTTTCCTCTGGAAGACAAATGCAAAGAATCAAACTTGGCTGGACTTAAAACAGTTTTGACAGGGGAGGACTCGTCGGATTTTTCACTTGTATATCTGGACAACACAGGATTCGTTTTAAAAACCACCAAAACTTTTGACGGGAAATCCAAATCGAGCTATACGTTGATCGCGCGCTTGCCTCGCTGCAATAAAACAGCAGAAGAAGTGGCGGTTAAAATCGAGATACTTGATAAAAACGACCATACACAACAATTTAACGTAACAACTGACAGGATAGAGATTCTTACCGATGTCAAAAGCCGAGTTAGGAAGCCAAGAGCCATTTCTGAAGCTTTGTCCTACACCGTTTCAGTTTCCGAAGATATGAAAGTCGGAGATTTGATCTTTACGGTACCGGACCAGAAGTTCGAGAAGAAGTGGTTCGAGGTGGTTTCGGACGGACACTCAGCGGTCCAGATGGAAAGAGACTCGGGACGCGTGTACTTAGCGCATCGCTTGATGTCAACAGCCGAGGTCATGGTTAAAATCCACAACATGAGAGGTGACGAATGGTACCTGTGCCGGCTGACTCTGACCCTCTCCAACCTGTCAGATCTGCAGTGGGCCATGTTCCCCTACCCCTACCTAGCAGCTGTGGGCCCTGACACTGGTGCTAGCTCTGTTGTCTACAAGCTTGTGGCCCGAAGTGGCGATGGCTCAATGGGAACAGCTCACTTCCTTTTGGTTGATGGTGGGGAAGATTCATTTGAAGTAGACCGAACAACAGGAGAAGTGAAGACCACAGGGCGACCTCTGACCCCCAGTAAGGAGTACACACTGACCGTCCAGGCAATGGACTCACAGGGCAGGAAGGGCCCGCACGCCTCTGTGTTCATACTGGCCGGCTTCCGGCCCCCTCAGTTCACCAATACCACCTACACGATCCACATCCCAGAGAGCACCGGGGTGGGCCAAGCGGTGGCGGTGGTCCAGGCTATCTCGTTCCAGAGGAAGACTCTTTCCTATATGCTGCTAGTGAACCCAGGCAACCTGTTCAGCATAAACCAGGAGAGCGGCGCACTCAGCCTGACACGCACTGTGGACTATGAGAGTGGACAACATCTCCATCACATGCAAGTCAAAGCTTCTGAACCAGATACAGGACTTAGCAACATGGCAGAGGTGGTGGTTCACATCACAGATGAGAATGACTGCACACCAGAGTTTATGCACTCCATTTACAGTCGAGACAACGTCCCTGAGACCACCCCTACTGGCACATCCTTACTGCAGGTTCTGGCTCGTGACTGTGATACGGGCCTGAATGCAGAACTCTCCTACTTCATACAAAGCGTGGACTTTGACATCTCATCTCAGGGAGTGGTGAGCCCCAGTCAGAGGCTGGACTATGAGAGACCCAACCACATGTACGAGTGCACGGTGGTGGCCGTGGACAAAGGAACGCCCCCTCGCACAGGCACAGCCTCCATCCGAATCCGCATGGCCAATGTCAACGATGAAGCCCCTGTCTTTTCACAAACTATATATAAAACCTTCCTTTCAGAAGACGCTGGCCCTGAGACGTTAGTAGCCATTGTGCATGCCAAAGACCCAGACGGGGATGGCGTAACGTATGCCATCACCGGGGGTAATGAAGACAGCAATTTTGAGCTGGACAACCAGAAGGGCATCATTAAACTGCGCCGTAGTCCTCCTCCTAAACTGCGCGGGCCTCAGTATGTCCTCAACGTCACGGCGACCGATGACAACACAGCCGGTGGGCCACTCCCCCTCAGCAGCTCCGCCCAGGTCATTGTTGGCATCAATGACATCAACAACAACAAGCCAGTATTTGATGAGTGCCACAACTACAGCGTGAATGCACTGGTCCTGGAGAATCAGCCCCCGGGCACTTCTGTCCTGCGCGTGCTGGCCCACGACGCCGACACAGGGGTCAACGGGGAGGTCAAGTATGGGATAATGCAGAGGGACGGAGCCTCACCAGGATTCACTATAAATCCTGACACAGGTGTGATCAGTACGGCGGTAAGTTTTGACCGAGAGAGGCAGCGAGAGTATACGCTGTCAGTCACGGCTACTGACCAAGCACAGGAGCCCCTCATCGGCATCTGTCAGATCACTGTCCTCATCGCTGACCAGAACGACAATGACCCCAAGTTTGAGAACAGCCGCTACCAATACTTCCTGCGAGAGGACACGCCAGTTGGGACTAGCTTCCTGAGGGCGGCGGCTCATGATGACGACCAGGGCACCAATGCGGCCATTACCTACTCTCTGTCGCAGCAGAGCCCAGCTTACTTTCACATCAACCCCAGCACAGGATGGATCTACGTCAACCAGCCTATCTCACAGACATCACGGATCAGCCAGCAAATCATCGCTACAGACGGAGGGAGTCGGAGCAGCTCGGTCGACCTCACTGTCATCATCACCAACGTACACAACCAGCCCCCGCAGTGGGAACAGGCGGAATATTGGGTCACAATCCCGGAGAACACACCGCGTGACACCAAAATAGTGACCATCAAGGCAACGTCCCCTCTTGGTGACCCCAGGGTGACTTACAACCTGGAGGAAGGTCAGGTTCCCGAGACCAACATGCCTGTGCGCTTCTACATCAAGCCTAACCGGAGGGACGGTTCTGCTTCTATCTTGGTGGCAGAAAATCTGGACTATGAGACCACGCGTTTCTTTACTCTCCGAGTGCGTGTACAGAACGTGGCGGCTGTACCACTAGCTTCCTTCACCACTGTCTATGTCAACATCACAGATGTGAATGACAACGTTCCCTTCTTCATGTCATCCACGTATGAGGCGACGGTTCCAGAGGGTGCAGAGATCGGCACATCAGTGGCTCAGGTCTCAGCCTCTGACCTGGACTCCGGTCTCCATGGCATGATTAACTACATCATTCTGAAGGATCAAAGTGGCGACTCGCAGTTCTTCAGCATTAATTCCTACACAGGCATCATCCACACCCGGGCCACCTTCGACCGTGAGCAGAAAAGCTCCTACTTGATCGAGGTCCAGTCTCAGGACAGCTCCGAGTCGGCCCGGCCCAGTCAGCAGGGCCAACCCAACACAGACACAGCCTACGTGAGGGTTTTTGTCACAGATGTAAATGACAATGCTCCAGCTTTCTCCCAGTCTGTATATGAGATCAGCGTGGAGGAAGACAAGGAAGTGGGTTTTGTGGTCATTACCGTCACAGCTAACGATGAAGATGAAGGTGCCAATGCCAAACTGCGGTACCAGATTACCTCCGGGAACACCATGGGCACGTTCGATGTGGAGCCAGAGGTTGGCACAATCTTCATTGCCCAGCGGCTAGACTATGAGCAGGTGCAGCGCTATGAGTTACGGCTGGTCGCATCGGATGGAAAATGGGAAAACCAGACAATGGTTGTCATTAATGTCATCAACCAGAATGATGAGGCACCCCTTTTCACTCAGACTGAGTATCACGCCAGTGTCATGGAGGAACTTACAGAGCTTCCTGTACTTGTACTAGAGGTCTCAGCCACAGATCCAGATCAAGAGGCAGACCAGCGTGCAGTGCGGTATTCTCTACATGGGCAGGGAGCTGGTAGCGAATTCACCATAGATGAGATGAACGGTAGGATCTTCGCCCAACGACGTTTAGATCGTGAGGTTCGCTCGGCCTGGCAGTTCCTTGTACTTGCCACTGATGAGAACGGGGCAGGTCTTACCGGGTTTGCTGATGTTCTAGTCGATGTGCAGGATATCAATGACAATGCACCTGTTTTCCTGTGTGCAACGGACAACTGCTTTTTGGGTCACGTGCCTGAGAACTCCCCAGCAGACACTTCCATCATGGAGATGCGGGCCACTGACCTAGATGATCCAAAAGCTGGCAAGAACGCTATCCTTACCTATAGAATTGTACAGAATGTGCGCAATGAGATCAATCTTAACCTCTTCTCCATCAACCCAGCCACTGGCACCATCTATACTGTTCTGCGCTCTTTGGACAGGGAAGTGGTGGATCGATATCTCGTTGTGGTAGAAGCTCGTGATGGAGGAGGACTTTCAGGAACAGGAACAGCCACCATCATAGTTTCCGATGTCAATGACCATCCTCCAGTGTTCACCCAGAGGGTCTACATGGCCTCTATGCCAGAAAACTTAGACATCAACAGCGAGGTAGTGGTAGTGGTTGCCACCGATGGGGATGAAGGTGAAAATTCAGTCATGACATTCAGCATTATTGGTGGAGATGAAGACCGTAAATTCTTCATCGAGACAGACAAGGTAAACCGTCGTGGCATAGTGAGACTGAAGAAGAAGATTGACTTTGAGAAGCCACATGAGCGCACGTTCAACCTGACGGTCAAAGTGGAGGATGCTGACTTCTTTAGCCTGGCCTACTGCATCATTCAGGTTGAAGACTCCAATGACCATGCTCCAGTCTTCTTCCCACAGTTCTACGAGGCAGGATCCATGTTTGAAGACGTCCCAGTGGGAACCATAGTGGCACAGGTGACAGCCGTGGATCTGGACTCTGGTCAAAATGGGAGATTTACATACAGCATTGCCCCAGAATCCGACCCCTTTCAACAATTCCTGGTGGATAAGAGCGGTTGGGTTGTAGTAGCTGACTCTCTAGACAGGGAAAAGGTGTCCCAACATAGACTTATGATCCTGGCCACAGACATGGGCAGCCCTGCTCTGACCGGCTCTGCCATTGTGTTAGTGACTGTACAGGATGTCAATGACAATGGACCAGAGTTTGAGGCTCCATATCGGCCCATTGTGTGGGAGAACACTGTTGCGCCACAAGTCGTTCACATGAATGACACATCCGTTCTGTTGCATGCTATTGATAGAGACACGTCATCCAACGGAGGGCCTTTTTCCATTCGTCTGTTGATGTTGACCTCTGATGTTACTAATTTCAACTTGACTGATCTGCGGAATGGCAGTGCCATGATAACTGCTCTCCGCAGCTTTGACCGGGAACAGCAGAAGCGGTATCTTCTCCCCGTCCTGATGATTGACAGTGGCTCTCCACCAATGAGCTCCACCAGTACACTTACCGTCATAATCGGAGATAAAAATGACCATCCCCATGCACCTGGACACAGCGAGTTCATAGTGTACAATATACAGGGTACACTCCCCACAACGGTACTTGGACAAGTTCAATCCCCTGACCTTGATGATTGGAGCGAGAAGGTTTACAAGTTCGAAGGCAAACCCCCCAGGCAGTTCAGCCTGAACCAGAACACCGGTCAGCTGAGCATCCGGGAGGGCACACCAGCTGGATTCTACAGCCTGCAGGTGAGGGTGGCAGATAAGAGCTGGCCTGACGTCACCTCGTCGGCCGAGGTCACAGTGATGGACCTGGAGGAGGAGGCGCTGAGGAATGCTGGCTCCATCAGACTGGCCAGT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00318676_00446341.mRNA True 5565 mRNA 0.52 20 318676 446341

Neighbor

gene id symbol gene type direction distance location
CI01000016_00294886_00298452 NA coding upstream 19515 294886 ~ 299161 (+)
CI01000016_00229474_00234707 KCNV1 coding upstream 83761 229422 ~ 234915 (+)
CI01000016_00206576_00207640 PAQR7B coding upstream 110741 206576 ~ 207935 (+)
CI01000016_00200989_00201760 STMN1, STMN1A, STMN1B coding upstream 116537 200721 ~ 202139 (+)
CI01000016_00116237_00122376 NA coding upstream 194902 115163 ~ 123774 (+)
CI01000016_00496095_00506965 NDUFAF6 coding downstream 49754 496095 ~ 507033 (+)
CI01000016_00540871_00541608 PLEKHF2.L, PLEKHF2 coding downstream 94291 540632 ~ 541723 (+)
CI01000016_00569502_00581271 NA coding downstream 123161 569502 ~ 581499 (+)
CI01000016_00772375_00772848 NA coding downstream 325929 772270 ~ 772889 (+)
CI01000016_00885996_00887374 NA coding downstream 439655 885996 ~ 887478 (+)
G93216 NA non-coding upstream 33826 284593 ~ 284850 (+)
G93215 NA non-coding upstream 34243 284200 ~ 284433 (+)
G93149 NA non-coding upstream 67102 182328 ~ 251574 (+)
G93143 NA non-coding upstream 131005 176999 ~ 187671 (+)
G93086 NA non-coding upstream 163996 153963 ~ 154680 (+)
G93157 NA non-coding downstream 4272 450613 ~ 457007 (+)
G93161 NA non-coding downstream 14099 460440 ~ 463979 (+)
G93290 NA non-coding downstream 171091 617432 ~ 617962 (+)
G93300 NA non-coding downstream 187761 634102 ~ 634319 (+)
G93301 NA non-coding downstream 193320 639661 ~ 639878 (+)
G93406 NA other downstream 459059 905400 ~ 927532 (+)
G95439 NA other downstream 3415834 3862175 ~ 3862305 (+)
G95648 NA other downstream 3826295 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 4388217 4829592 ~ 4837457 (+)
G95792 NA other downstream 4773539 5219880 ~ 5225941 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location