CI01000016_00456765_00460615 (TP53INP1)


Basic Information

Item Value
gene id CI01000016_00456765_00460615
gene name TP53INP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 454828 ~ 461209 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00456765_00460615.mRNA
TTGTCTCAATAATGCTGTGGGGTGAAGAACAGCTTGTAGTCCTTCACTTCACAGATGTCCCTCTTTGTTGTTGCAAGCAAAACAACGTATAAGGGTACCCTCATGAGTCACAGTCCTGAACGAGGCTGGGTGTAACTGTACAAAGATCAGTTTTCATAGGCATCAGCTTCGTGTGAAGAGGGCAGGCAGTATCTGTGACAGCAGTGACACTTTAGACTGTTTTGTTTTGGCTGCTCTGTTCTCGGGAATATCTGTCTGTCTTTTATTAGCGTACCTGTAATTTATGGCTAATCGCAACAGAACATGACCTGTTCATCACCAGGAAATGTTGTGTACTTGAAGGCTGGTCAGTTTGTGTTGTGAACAACAATGTTGTCTTCTCGCTTGTCCTCCAGGGCCTGTTTTTGCACTATCAACAAGAGCAATGGCTGAACTTCATCAGGTGTTCCTCAGCTGAGAAGGAGTAACTAATGCACTTCAGCACCTTTACCAAGATCTCAGTGAGCGGCTCCCGCAGCTGATGACCAAAGAGCCCAGCCCTCACCCACTCCCAGCAGGACTGTCCAGCCTCACGCCTCTTCCCGGGACAAAAACATGTTCCAGAGGTTCACCAGCATCTTGTTTGGAGACTCCCTGGAGGAGGGCAGTGGATGTCCTGTGGATCCAGACTTCAACGAGAAGGAGGAGGACGATGAGTGGATTCTGGTTGATTATCTAGGTGCAAGGCAATCTGGTTGGCCCACTTCACCTCTTTTAGGACAGGAGGAGACAGACATGTTTATGGGCAACAACGCTTTTAGCTTGTCAGACAAAAGATGCTGCAAGTCTACAGATAAACAAGGTGTGGCTCTGTGCAAGGGAAGTTCTGTTGTGTACTATAACATCAATGCTGTGGCGAAGGCCTGTTCCGGTGCGTGTGGAGATGATCTGGTGGATGTGTGCTCTGAAAACGTCGCTCCCCTGGACTCTCCTGTGCGCTGCTCCTCCTGCTCCTCTCTGGATTCGGCGGCAGACACCGACGCAGAGGACAGCAGCTTCTTGCGTCTAGAGGCGACATGTGGGCTGGAAGAGAGCTGGTTCATCACCCCTCCGCCGTGTTTCATGGCTGGAGGCAGAGCGCCGGTCCTGCTAGAGACCAGTCCCCTGGAGAACCTGCTGATCGAGCACCCCAGCATGTCCGTGTACGCCGTTCACAGCCCTCGTCAACGACCAGCCAAGGACAGCACCCGTGAGCCATCGATTTTAAGATCTGAAGTTCAGCGTCGGCCAAGTCACGCTTCCGGCTGCTACGCAGCCGCTCTGGTCGCTGCTCACGCAGGCTTTCTGGAGCAGACCAAGAACGTCCGCCTGGCTCAGCGCATCCGTGACAACGTGGAGCGCCAGCAGCTGTCTCGCAACGCCCTTCGCCGCCTCAACCTGCTGCGCGAAGGCGGAGCCAGACAGGCCAAAGCCACCGGAGGCTACGTTCACCAGCCGGGACAGAGGCAGTACAACTACTGAGACGGTTCCCACTGCACTCCCCCGTCCTCCCCTGCAAGCCGCCCCCTCCACACTGGGAGAATTAGTCTTTCGCCAGAAGGAACGGAGTCCTTTAGAATCAATGCCATAGGTCACTTTACTTCACGGCAGGTTCCGCTCGACCTGAATGTGTCTGCATCATGTCACGTGTTTCCTATATAAGCTCCATCTGTTATGTTCGGTCTTATGTTATATGTCATGAAGGTTGAATAACCAAGTGTTTTGTTCTAGTGAGCATGATGTTGTAGGCATCATGAGTAGGCAGCTTGACGCTTTCTTTGCTTTTTTGAAGCCATACTAAGTTCAATCACATCAGTGATGAAATCATCAGCAGCACTTTTCTGGTTAGGAAGGAACCTGCCTGTGACTCTGTAGATCAGTGCTTTCTTCCTCTTTGTTTTTTTTTCTCTTTAAAAAAGTATACTGGGTTTATTATCACTAAAAGCCTTGTTTCCATAGTAAATTTCAAAATATATAAAATATATTTAAAAAACTTCCAAAATATTTTCAAAAGAAAAAAACATTGAATATATATTACATATCAGTATGAAGTTGATAAGAATGTGTGTTATCTGCGTAGATATGTATGTAAGTAGTTTTTTTCCTATTTTTAGTGACTGATTTGATGTATGACTGTGTAGTGCTAATTTTCCAACAGGTGAGAAAACCAACAAAAAAAAGTGTTGTAATGTTATTTTTCATGTTTGCTCTATATCTGCAGTACATGTCTCAGGGTCATCACTGTTCACCTTCGCTCTTTGCTAAGAATGCATATTACTTGCAGATGGTAAACTGTCTTTGTACATACTGGAGAACCTCTAACTTTGTCGACGTGTATGTTACCTTGTGGAAATATTTGTAATTGATGTAAATCTTTAACATAACGTGCATCTCACACTTTGAATGAAAGCAAAATGCTTGCTCCTCCGAGGACTGTGAAACAAACTCTTTCTCTTAATTGACTGTTAAAAACTTTGACGACGGAGTGAAACTGTTAGCATTTTAATCTTTTTTTGTTTTTTTTAGTTTTATCAATGTAGTGACTTTTTGTGTTATATGCCTTTTTCATGTTTTATTTGACTAGTTACACATTGTATATTGCTGAGCGGCATATTTAAAGTAGCAAAAACTAAAAATTCTTCGTAGGTTATGTTTGTTACTCTTTATTCCTTTATCACGCGAGACCTGGTGTTGTAAATTTCCGGTCACACTGCCAAGGTAAATGTCTCCCCTAAATGAATGAAACTGAATTCATTAACTCTGACATTCAGCCGAATGCATATTATATGCATGAGCAACTCAAGGAAAACAACTACAGCTTCTCTTCTTTTCTTTTGCTTGCTGCAGTCTGCGCTGAGCAGTATATTGCATTTTCTGACATTTTTCTTTTTCTTTTTTGTGGACGAAGGGAAAGCAAGGGACGTTAGGTTCTCTTCATATTCCTTGAGTAATACTGGAGAGGCCCTCTTTCCCTATGTCAGTAGATGCCTGATTTTTTTGGTATTCAAAACAGGGATTTCATTTCGCCTTGAATTGCATTTGGGGATCATGTGCCTTCCAGGTGAACAGTATGACAATGCATCCGTGAAGAACTTGAAATTTGTCCAAAGGGACACAAACAAATGTAATTTTACTATGCACAGAGGAATACCTTGTCTCTGTGAGCCACTTGCTCTGTCAACTTTTTACACGAAATGTAGCAAACGTTTTCTGTGTTTAATGTGTGAAGAATATTTTCTGTGGCATTGCTAAGTTTTAGACTATGCTTTGGTTGATTTTTAGTTTACTGGAATAATACAGCACTTTGCCAAAAGTGTAGGGTTTTAGCATTGTTTATTTATCTTTTTCTTGTACTGATATGTTTTGGATACATGTCATACACAAACTGTTTTGTATGGGTAGTATAATTTGCAAATAAA

Function

symbol description
tp53inp1 Predicted to be involved in autophagosome assembly and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of cell population proliferation; regulation of autophagy; and regulation of transcription, DNA-templated. Predicted to be located in PML body and cytosol. Predicted to be active in autophagosome and nucleus. Is expressed in nervous system and neural tube. Orthologous to human TP53INP1 (tumor protein p53 inducible nuclear protein 1).

NR:

description
Zgc:158431

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00456765_00460615.mRNA True 3437 mRNA 0.44 5 454828 461209

Neighbor

gene id symbol gene type direction distance location
CI01000016_00448107_00452861 CCNE2 coding downstream 1967 447858 ~ 452861 (-)
CI01000016_00251025_00251471 GBP coding downstream 203342 250218 ~ 251486 (-)
CI01000016_00166492_00172759 SERINC2L coding downstream 282069 166085 ~ 172759 (-)
CI01000016_00153934_00154312 NA coding downstream 299206 153908 ~ 155622 (-)
CI01000016_00099623_00100245 NA coding downstream 354583 98834 ~ 100245 (-)
CI01000016_00471859_00490955 NAGPA coding upstream 9574 470783 ~ 490955 (-)
CI01000016_00513504_00514565 NA coding upstream 50915 512124 ~ 514744 (-)
CI01000016_00581946_00586945 NA coding upstream 120657 581866 ~ 586997 (-)
CI01000016_00589778_00591095 METTL6 coding upstream 128463 589672 ~ 591294 (-)
CI01000016_00592794_00596916 NA coding upstream 130921 592130 ~ 597102 (-)
G93934 NA non-coding downstream 53056 400493 ~ 401772 (-)
G93873 NA non-coding downstream 173617 280994 ~ 281211 (-)
G93835 NA non-coding downstream 251882 199158 ~ 202946 (-)
G93829 NA non-coding downstream 265490 188604 ~ 189338 (-)
G93802 NA non-coding downstream 315954 132552 ~ 138874 (-)
G93954 NA non-coding upstream 47862 509071 ~ 509303 (-)
G93988 NA non-coding upstream 113091 574300 ~ 576181 (-)
G93992 NA non-coding upstream 118008 579217 ~ 579783 (-)
G94011 NA non-coding upstream 174958 636167 ~ 636370 (-)
G94017 NA non-coding upstream 183464 644673 ~ 644880 (-)
G94786 NA other upstream 1809627 2270836 ~ 2276275 (-)
G95070 NA other upstream 2524051 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3174398 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3404552 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4451499 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010160 tp53inp1 coding NC_007127.7 CM002900.2 40560622 ~ 40569769 (+)
bowfin (Amia calva) AMCG00021816 NA coding CM030130.1 CM030130.1 30708825 ~ 30719230 (-)