CI01000016_00496095_00506965 (NDUFAF6)


Basic Information

Item Value
gene id CI01000016_00496095_00506965
gene name NDUFAF6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 496095 ~ 507033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00496095_00506965.mRNA
ATTGTTTACATCGGAGCGGAACGTACTGTCAGAAGTTCTTGCGAACAGGGGAGTTGTAATATGACGCACACGCAAGAGGAGGTACAGCTCAAGGATACTGGATGCATGGGCTTTGCTATGGCATCCAGTGTAAACATAAAGAATGGATTTTTAACCACCAAAAACTCCCTGCATATAAAGATTCCCTATCCCACATTTATACAGAGGGCAACCGAGATCAAATGCACAAGAGCATTAACAAATTCGACAGGACAGCACAATGAACAGTATTGCATTGATATTGTAAGGAAGAGGGACTATGATGGATTTTTATGTTCATTGCTTTTTCCTGAGGCTGTTCGTCGCTCTGCACTGGCACTGAGGGCGTTCAATATTAAGGACTCTGTTTCCCAGAAAACCATTGGTTTAATGCGAATGCAGTTCTGGAAGAGCGCCGTGGAAGACATTTACAGAGATGACCCCCCAGCCCAGCCCGAGAAAGACATGGAGGACAGAGCGTACAGGAACCTTCAGGAGCTGGAGGCCTATGGTGAAAACACACAATCCTCTCTTCTGTACTTGTTGCTGGAGGCACTTGGTGTGAAAAACGTCCACGCAGATCACGCCGCAAGCCACATCGGCAAAGCCCAGGGCATCCTGACCTGCCTGCGGGCGACCCCCTATAACAGCAGCAGACGCAAGGTCTACCTGCCCATGGACATCTGCATGCTGCAGAGATTTACTGATAATGCATTTTCACTGTTTCTCACCCAGCATGGAGCGTCTCAAGAGGACTTCATCCGTGGCAGCAGGGACCAGAACGTCAGGGACGTAGTTTATGACATTGCCAGCCAAGCCCATGTCCATCTCCAGCACGCAAGATCATTCAGTGAGAACGTTCCACATGCAGCCATGCCTGCCTTCCTGCAAACGGTTGTTTTGGAGGACTACCTGCAGAGAGTGAGGAAAGTAGATTTCGATGTGTTTCACTCCAGCCTACAGAAGAGGAATCCAATGATGCCCCTTCAGCTGTATTTACGATCATGGAGGAAGATCTATTGATATGTTCGATTAAAACACCATCTGATTGTTTTAGATGAATTCCCTGTCAAACAAGCCAAGCACTTGCA

Function

symbol description
ndufaf6 Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Fanconi renotubular syndrome 5 and nuclear type mitochondrial complex I deficiency 17. Orthologous to human NDUFAF6 (NADH:ubiquinone oxidoreductase complex assembly factor 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00496095_00506965.mRNA True 1109 mRNA 0.48 8 496095 507033

Neighbor

gene id symbol gene type direction distance location
CI01000016_00318676_00446341 NA coding upstream 49754 318676 ~ 446341 (+)
CI01000016_00294886_00298452 NA coding upstream 196934 294886 ~ 299161 (+)
CI01000016_00229474_00234707 KCNV1 coding upstream 261180 229422 ~ 234915 (+)
CI01000016_00206576_00207640 PAQR7B coding upstream 288160 206576 ~ 207935 (+)
CI01000016_00200989_00201760 STMN1, STMN1A, STMN1B coding upstream 293956 200721 ~ 202139 (+)
CI01000016_00540871_00541608 PLEKHF2.L, PLEKHF2 coding downstream 33599 540632 ~ 541723 (+)
CI01000016_00569502_00581271 NA coding downstream 62469 569502 ~ 581499 (+)
CI01000016_00772375_00772848 NA coding downstream 265237 772270 ~ 772889 (+)
CI01000016_00885996_00887374 NA coding downstream 378963 885996 ~ 887478 (+)
CI01000016_00952494_00954683 NA coding downstream 445461 952494 ~ 954953 (+)
G93161 NA non-coding upstream 32116 460440 ~ 463979 (+)
G93157 NA non-coding upstream 39088 450613 ~ 457007 (+)
G93224 NA non-coding upstream 127916 309289 ~ 368179 (+)
G93216 NA non-coding upstream 211245 284593 ~ 284850 (+)
G93215 NA non-coding upstream 211662 284200 ~ 284433 (+)
G93290 NA non-coding downstream 110399 617432 ~ 617962 (+)
G93300 NA non-coding downstream 127069 634102 ~ 634319 (+)
G93301 NA non-coding downstream 132628 639661 ~ 639878 (+)
G93310 NA non-coding downstream 156971 664004 ~ 664235 (+)
G93313 NA non-coding downstream 159332 666365 ~ 666745 (+)
G93406 NA other downstream 398367 905400 ~ 927532 (+)
G95439 NA other downstream 3355142 3862175 ~ 3862305 (+)
G95648 NA other downstream 3765603 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 4327525 4829592 ~ 4837457 (+)
G95792 NA other downstream 4712847 5219880 ~ 5225941 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010926 ndufaf6 coding NC_007127.7 CM002900.2 40487732 ~ 40508624 (-)