CI01000016_00513504_00514565


Basic Information

Item Value
gene id CI01000016_00513504_00514565
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 512124 ~ 514744 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00513504_00514565.mRNA
ATGAGAAGTGTTGCCATTTATTCATAACGTTATATTCATCATTATATCATTGCACTTGGCAGGTGTGAATTTCTCAATTTGGACAGAGCACCATGCGTAGGTTGCCGTGCCTTGCCTCCGAGCCAAGAGGAGAAATCCCACTGTGCTACTGACAGGAATTTACGCGCAGCTGAACAAGGATGCCAGAGGAGCTTGCAAACTGCAGTGTGTGTTGCTGTACCACGACCAATAAGATACTCATGGTGGTCTTCATGATATCACTGATACTTGCCATACTCTTTGGAAACCTCTTGACATTAGCAGTGGTCTTCGGAACTAAACATTTCCACACTCCACAGGGTTATTTAAAAGCCTCACTGGCCGTGGCAGACCTGGCTGTGGGAATTTTTGTGGTACCCATTTCGGTTTACGCTGAAATATCCCTCATGATCTACAATTCAATGCCGGAGTGGACAGCGCGCAATTCCCAATCCACTCCTTTCCACCCGTGCAGTTTCATCGGACCTGTGTTTGCGGGATGCACTTTAGTGTCCATTACAACCATTTTCCTCCTGACCATTGAAAGGAGCATTGCCGTTTTGAAGCCACTGCACAAGGAATCTGTCATAACTAAAAAAAGAACAAGCATACTAATAGTCTTTTCCTGGATGGGCAGTTTTTTCCTGGCAGTATCTCCAATGGTTTTCAGTAATGAAATCGCGTTGGAGTACAATCCTTGCAGCCGCATGTGCAATTACGCGCTGGGAAGCACAGACTTCCCATCCCAGGCTTGGAACATTCTCTTACTCTTCCCTGCCTTTGACTTTACGCTGCTCGGAGGTACTGTTGTCATCAATATCATATCGCTCACCACAATCCGCCAGCATTCAAAAAGAAGAAAACATCTCGCAGAGACAGAGAGGCAAAACGCAACGAAACCAACCTTCTCCGACATCAAGGCTGCCAAGACGATAGGCACTCTGACGTTGGCTTTCACTGCTTCTTTCACTCCCATCGCCGTGTTTGTAGTTGGAAATGTGTTGGGAAATGAATGGTGCACTTTTTCATTTTTTGCCTTTTGGATTTTGACCACTAACAGCTGCTGGAATGTTATTATATATGGTGTGAGAGACCAGAAGTTCAGAAGTCGTGTGTATCAGCTGCTCATATCCACTCATTTGAACACTGTGCCCAAAAAAACTGAGTATGAAAACACTGTAAATGAGGGGAAACTCAATGAGGAAATAGTCAAGCAAACCTAATTACTGATCTTACTGATCAATATCCCAATTTAGGTGGTGCTACTGTGTTCATAACAGGCCCCCCCAAGTTAGTATCTGGGCATTGCAAGGAAGCAAGCTGGTTAGTAGTTAGCGTACCAGCTACAATGTTCCATAAACTAGCTTATAAAAAATAGCTGGTTTGTTGCTGGTCCAAGGTCCACCTTAGACCAGCTAGTAACCATTCTAAACACAGCTGCCACCTTAACCTGCCAGCTTTTCCAATCTCCCTGGATCAACTTGAGGTTAAAGGGTTAGTTCACCCAAAAGTGAAAATTCTGTCATTAAATACACACCCTCATGTCGTTCCACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCCAATGGCTCAGTGAAGCCTCCATTAAAAGCACTTTCAAATGCCCAGAAAGGTACTAAAGTTATATTTAAAACTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTCGTTCGGAGCGCGTATCGAACTGCCAAAGTCACGTGAACCATTGAAATTTCGAAACACTTATGATGTAACAAAGCATCGTTTACTGAAATCATGTGACTTTGGCGCTCCGAACCACTGATTCGAAACAAAAGATTTGTAAAGCTTCAAAGCTTCATGAAGTAGTGTTTTAAAATCGCCCATCATTAGATATTGTTGAATAAAGTTGTTATTTTGTTTTGCGCACAAAAAGTATTTTCGTTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATAAACTGTTTTAAATACGTCTTTAGTACCTTTCTGGGTGTTTGAAAGTGTAAATTAACTTGCTTTCAATGGAGGCCTCACTGAGCCATCGTATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATGACATAATTTTCATTTTTGGGTAAACTAACCCTTTAAGTGTCTTTCTTAAAGACATATTGTGGATATGGATCATCCCTTGTAATCAAACTTACTATGTTTTTATTTTCAGCCTAAATATCCAACCATTAGGCCACAATTAAGGTGCCTATGTGTTTTAATGCCTTCATAACCACCTATTGAGTGGCATCTGCTGCTATCCTCAGGTCAACTGTTTTGATTTATACTAAACTTTGCATGACTTTTCATTGTCACAAGATTTCACCATGCATTTGAATATACATAAGCATGGATCACGAAAGTCCCACAAATCTGCATTGAGGTCCTTATACATACTTGTAACATGGATGCTTCTGTAGGATGTTGATTTGCTTTTGCTTCTTTTTTCATTGATACTGAGAACTGATATTTCAAGATATTGTGTTGCTTCAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00513504_00514565.mRNA True 2621 mRNA 0.41 1 512124 514744

Neighbor

gene id symbol gene type direction distance location
CI01000016_00471859_00490955 NAGPA coding downstream 21169 470783 ~ 490955 (-)
CI01000016_00456765_00460615 TP53INP1 coding downstream 50915 454828 ~ 461209 (-)
CI01000016_00448107_00452861 CCNE2 coding downstream 59263 447858 ~ 452861 (-)
CI01000016_00251025_00251471 GBP coding downstream 260638 250218 ~ 251486 (-)
CI01000016_00166492_00172759 SERINC2L coding downstream 339365 166085 ~ 172759 (-)
CI01000016_00581946_00586945 NA coding upstream 67122 581866 ~ 586997 (-)
CI01000016_00589778_00591095 METTL6 coding upstream 74928 589672 ~ 591294 (-)
CI01000016_00592794_00596916 NA coding upstream 77386 592130 ~ 597102 (-)
CI01000016_00601605_00607255 RSPO3 coding upstream 85878 600622 ~ 607255 (-)
CI01000016_00679328_00729780 NA coding upstream 164048 678792 ~ 729966 (-)
G93954 NA non-coding downstream 2821 509071 ~ 509303 (-)
G93934 NA non-coding downstream 110352 400493 ~ 401772 (-)
G93873 NA non-coding downstream 230913 280994 ~ 281211 (-)
G93835 NA non-coding downstream 309178 199158 ~ 202946 (-)
G93829 NA non-coding downstream 322786 188604 ~ 189338 (-)
G93988 NA non-coding upstream 59556 574300 ~ 576181 (-)
G93992 NA non-coding upstream 64473 579217 ~ 579783 (-)
G94011 NA non-coding upstream 121423 636167 ~ 636370 (-)
G94017 NA non-coding upstream 129929 644673 ~ 644880 (-)
G94786 NA other upstream 1756092 2270836 ~ 2276275 (-)
G95070 NA other upstream 2470516 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3120863 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3351017 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4397964 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010158 BX072576.1 coding NC_007127.7 CM002900.2 40463365 ~ 40464426 (+)