CI01000016_00601605_00607255 (RSPO3)


Basic Information

Item Value
gene id CI01000016_00601605_00607255
gene name RSPO3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 600622 ~ 607255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_00601605_00607255.mRNA
ATGCTTAGACCGGGTCAGTCCCTTCTAAAATGCAGAGCTTTTAACCATCTGAGACTCACTTTTCAGAGACACCTGGAACCGATTGACTTTAATCAGAGATGCTCCCTGAAGCACCTTCCATTTTTACCTTGCTGGATTCAGCGAGAGGGTTCAGGCGTGAGCACCCAGGGATGCCAGGGAGGCTGTCAGACCTGCTCCGTTTACAATGGCTGTCTGACGTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCCAATGGTTTCTACGGCACCCGTTCCCCCGACAGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTCTGCCTGCGCTGCAGAGCGGGATCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCCAGCGATACCAAGAAAGAGTGTGTCCCTGCATGTCCTGTGGACTGCGACTCCTGTCAGACCAGTGACACGTGTACAAGGTGTGTGCCGGGACACTACCTCCTGCATGGGCAATGTTATCACATCTGCCCGGACGAGTTTGAGTCCAACAACTCAATGGAGTGCATCCCGACAGTGCACTGTGAAGTGGGCGAATGGGGCGAGTGGAGCCCCTGCTCGCGCTTAGGAAAAACCTGCGGCTTCAAATGGGGTGAAGAAACAAGGACCAGGAAGGTCCTACAAAATCCCTCACCAATGGGGAGCGCATGCCCACAGACTTCTGAAAAGAGGGTTTGCGTTGTCAAAAAAAGAAGATTGGTATTTGTGGGACATTGCTGCTTTATGACAGACAGCAGGCCAACTCGACGCTCCATCGCTCTCCACCTCATAAACACTCAGGGCCTCAGCGCAGAGAGAGGGAAGAAGGGAAAATAAAGGAGGTGGAGATTCACATGTGAACTTCTCTGACTCCAAAGAACAATGACATGGCTTGATCACACACAAAAATGCAACAGTAAAACACACACAAAAAAAGTTCACACTTAAAGGATTAGTTCACAGAATTAAAATTTCTTGATAATTTACTCACCCGCATGTCATTCAATATGTTTATGTCTTTCTTTCTACAGTCGAAAAAAAATTAAGGTTTTTGAGGAAAACATTCCAGGATTTTTCTCCATATAGTGGACTTCATTGGGGTACAATGGGTTGAAGCTAGTGCAAGACAAGCATTTGTGGTTAATAAGTATATCATTTTTATTTTATTTTTTTAGAAAATGACTGATCGTTTTGCTAGATAAGACCCTTATTCTTTGGCTGGGATCATGTAGAGCCCTTTGAAGCTGCACTGAAACTGTGATTTGGACCTTCAACCCGTTGTACCCCAGTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTCTTTTTGACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGGGGTGAGAAAATTATCATGAAATTTTAATTCTGAAGTGAACTAATCCTTTATAGGCCCGTTCACACCAAGGATGATGGCTATATCTATAACAATAAAGATCAGTTCTAAAAATCATTCTAAATATAAAAGAGTCCAAACCACAACTATAACAGTAACGGCACAGAGAAACAATATCATTGGAATCACTTTCAAAACAATTTTTTCCAGCTGATGAACGATAAAAACGATAGCCAATCAGAATCCACCTACATTTAAAGCACTAGATGACATAATTGCAGCGCACACTTAGAATAAAAAGAACAATATTGTCTGCTGGTGTGGACACTAATATAGTTATCGTTATAGTTATCTCATATATATATATAATGCAATTAGTAAAAAAATATTGAAAAAAGTCTTTTTGGTTGTTTTTCATTTTAGTGAATAAA

Function

symbol description
rspo3 Predicted to enable heparin binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation; and posterior lateral line neuromast development. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; endoderm; forebrain neural keel; nervous system; and presumptive telencephalon. Orthologous to human RSPO3 (R-spondin 3).

NR:

description
Zgc:162040 protein, partial

GO:

id name namespace
GO:2000054 negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_00601605_00607255.mRNA True 1910 mRNA 0.43 6 600622 607255

Neighbor

gene id symbol gene type direction distance location
CI01000016_00592794_00596916 NA coding downstream 3520 592130 ~ 597102 (-)
CI01000016_00589778_00591095 METTL6 coding downstream 9328 589672 ~ 591294 (-)
CI01000016_00581946_00586945 NA coding downstream 13625 581866 ~ 586997 (-)
CI01000016_00513504_00514565 NA coding downstream 85878 512124 ~ 514744 (-)
CI01000016_00471859_00490955 NAGPA coding downstream 109667 470783 ~ 490955 (-)
CI01000016_00679328_00729780 NA coding upstream 71537 678792 ~ 729966 (-)
CI01000016_00754785_00770356 NA coding upstream 147428 754683 ~ 770356 (-)
CI01000016_00775184_00778097 HINT3 coding upstream 167403 774658 ~ 778097 (-)
CI01000016_00843272_00857193 NA coding upstream 235895 843150 ~ 857296 (-)
CI01000016_01088942_01089316 NA coding upstream 481297 1088552 ~ 1089339 (-)
G93992 NA non-coding downstream 20839 579217 ~ 579783 (-)
G93988 NA non-coding downstream 24441 574300 ~ 576181 (-)
G93954 NA non-coding downstream 91319 509071 ~ 509303 (-)
G93934 NA non-coding downstream 198850 400493 ~ 401772 (-)
G93873 NA non-coding downstream 319411 280994 ~ 281211 (-)
G94011 NA non-coding upstream 28912 636167 ~ 636370 (-)
G94017 NA non-coding upstream 37418 644673 ~ 644880 (-)
G94073 NA non-coding upstream 138417 745672 ~ 745975 (-)
G94106 NA non-coding upstream 190229 797484 ~ 797719 (-)
G94786 NA other upstream 1663581 2270836 ~ 2276275 (-)
G95070 NA other upstream 2378005 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3028352 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3258506 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4305453 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location