CI01000016_01183747_01191853 (GPD1L)


Basic Information

Item Value
gene id CI01000016_01183747_01191853
gene name GPD1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1183747 ~ 1192858 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01183747_01191853.mRNA
ATGGCAGCTCCGCTGAAAGTATGTATTGTTGGTTCAGGAAACTGGGGCTCTGCAATTGCAAGGATTATTGGCTCAAATGCACAGAAACTCCAGTGCTTTGCCACAACAGTCAAGATGTGGGTGTATGAAGAAATGGTCAATGGCAAAAAGCTTTCTGAGATCATCAACACAGAGCACGAGAATGTCAAGTATCTTCCAGGCTACAAACTCCCAGAGAATGTGGTTGCTGTGCCGCAGCTTCGGGATGCCGCAGATGGTGCCGACCTCCTGGTTTTTGTGGTCCCTCACCAGTTCATCCGGAAACTGTGTGATGAGATGGTCGGCTGTGTTTCGGAGAAGGCTCGTGGAATTACACTAATCAAAGGAATAGATGAAGGACCAGAAGGATTGAAACTCATCTCTGACATCATCCGGGAAAAAATGGGCATTGATGTCAGTGTCCTAATGGGGGCCAACATTGCCAATGAAGTGGCGGCAGAGAAGTTTTGTGAGAGCACCATTGTGCTTAATCCTGTTCTGTACATTTGTGCGCGGTGCAAGAAAATCACAGGTAGCAAGGTGTTGGAGAATGGCTTCTTGTTCAAAGAGCTCCTGCAGACGCCTAACTTCAGAATCACCGTGGTGGATGATGCTGACACAGTAGAGCTCTGTGGAGCCCTTAAGAACATTGTTGCAGTGGGCGCAGGATTCTGTGATGGTCTGCAGTGTGGAGACAACACCAAAGCAGCCGTCATCCGGCTGGGCTTGATGGAGATGATTGCTTTCGCCAAACTCTTCAGCAAAGACGATTCTGTGTCCTCCGCCACATTCCTCGAGAGCTGCGGCGTGGCTGACCTCATCACCACCTGCTACGGAGGACGAAACCGTCGCGTGGCAGATGCTTTTGCCAGGACAGGGAAGAGCATCGAGGAACTGGAGAAGGAGATGTTAAATGGACAAAAGCTTCAGGGACCATTGACTTCTGCTGAGGTCTATCATATCCTCAAACAGAAGGGCCTAGTGGATAAGTTCCCCCTGTTCACGGCTGTTTATCAGATCTGTTTCGAGGGCAAACCAGTTCAGGAGATGATCACTTGCCTGCAGAGCCATCCAGAGCACCTGTGAGTGTCTCACAGGGACACGGTGCCCCCCTTCTCTACCACCATCCCCTATGGTCTGTTAGGTTGTCCTACCTCTAACACTTTTACATACAAACACAATGTTATATTTTTAACTTTTTGTCCCAGGTCCAGTTCTACACTAATGGTTAGACTTGAACTCAGGGGTTTGCTTCTGACCTAGTTAGGGCCCGAGCACCGGTGTGCGAGGACCCTAATAGAATTGCTCCGTTTATAGGTTTTGTTGTTAGCATACATGACAAAATGTGCTCAGAGATTTTTTTTTTTTTTTGGAAAGGCCATTGGTTATCATCTATGGAAGATGTTTTCACCACGGAATAAAACAATTTAAAAGATGATTGCTACTTTTTATCTCACAATTCTGACATTTTCTTACAACCGCGCGTTTACATGTCACAATTCTGACTTTTTTCCTCGCAGTTCTACTTCTTTTCTCAGAATTGTGAAATATAAACTCGCAATTGCGAGTTATAAAGTCCAATTCTGAGTGAAAAAAGACTGACTTTTTCTCAATTGCGAGTTTATATCTCACAATTCTGACTTTATAACTCACAATTCTGAGAAAAAAAAACAAAAAAAAAATTATAACACGCAATTGTGACTTTATATCATGCAATTCTGATGGAAAAAAAGTCAGAATTGTGAGATGTAAACTCGCAATTAATTTTTTTTTTTTTTTTTATACAGTGGCAGAAACAATCTTCCATCGCCACTCTGTTTGAGCCATTATGGAGTTTTTAACTTTTCTCTCTGTCTGACTGCCCTCTTGTGGATGGTCCACAATATCACCTCACTGACAGATGAGATGAAATGCCTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTTAAATGACCATAGAGATCTAATCATAGAGGCTCACTCCATGTCCACATTGAAAGCAACATGACACGACTAGAACGTCTCCGATATAATCAGTGAAGTACTTGCGTTTTAAGATCCTGTCAAACCAGCACAGTACCACTATCCTTA

Function

symbol description
gpd1l Predicted to enable NAD binding activity; glycerol-3-phosphate dehydrogenase [NAD+] activity; and protein homodimerization activity. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be located in cytoplasm. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in Brugada syndrome 2. Orthologous to human GPD1L (glycerol-3-phosphate dehydrogenase 1 like).

GO:

id name namespace
GO:0006654 phosphatidic acid biosynthetic process biological_process

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01183747_01191853.mRNA True 2109 mRNA 0.44 9 1183747 1192858

Neighbor

gene id symbol gene type direction distance location
CI01000016_01122656_01129008 STT3B coding upstream 54739 1122656 ~ 1129008 (+)
CI01000016_01052539_01073915 NA coding upstream 108214 1052539 ~ 1075533 (+)
CI01000016_01033465_01037665 NA coding upstream 145301 1033465 ~ 1038446 (+)
CI01000016_00972599_01002933 NA coding upstream 180575 972112 ~ 1003172 (+)
CI01000016_00959079_00960728 NA coding upstream 222687 958653 ~ 961060 (+)
CI01000016_01217119_01220858 EBAG9 coding downstream 24261 1217119 ~ 1221937 (+)
CI01000016_01238151_01242924 GDF6, GDF6A coding downstream 45133 1237991 ~ 1242960 (+)
CI01000016_01253760_01273553 NA coding downstream 60548 1253406 ~ 1273953 (+)
CI01000016_01277792_01304615 NA coding downstream 84070 1276928 ~ 1304762 (+)
CI01000016_01408124_01408966 TMEM74 coding downstream 213778 1406636 ~ 1409165 (+)
G93434 NA non-coding upstream 98980 1084467 ~ 1084767 (+)
G93413 NA non-coding upstream 103812 1078828 ~ 1079935 (+)
G93414 NA non-coding upstream 143322 962579 ~ 1040425 (+)
G93409 NA non-coding upstream 250946 927840 ~ 932801 (+)
G93410 NA non-coding upstream 314810 862104 ~ 868937 (+)
G93442 NA non-coding downstream 2852 1195710 ~ 1198373 (+)
G93476 NA non-coding downstream 19486 1212344 ~ 1212621 (+)
G93449 NA non-coding downstream 35340 1228198 ~ 1235846 (+)
G93497 NA non-coding downstream 69062 1261920 ~ 1262207 (+)
G93483 NA non-coding downstream 147594 1340452 ~ 1342798 (+)
G93406 NA other upstream 256215 905400 ~ 927532 (+)
G95439 NA other downstream 2669317 3862175 ~ 3862305 (+)
G95648 NA other downstream 3079778 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 3641700 4829592 ~ 4837457 (+)
G95792 NA other downstream 4027022 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 4213011 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010914 gpd1l coding NC_007127.7 CM002900.2 39248644 ~ 39267227 (-)
bowfin (Amia calva) AMCG00002483 gpd1l,LOC108434205,LOC103034694,LOC105023484 coding CM030136.1 CM030136.1 16736684 ~ 16750596 (+)