CI01000016_01224759_01234682


Basic Information

Item Value
gene id CI01000016_01224759_01234682
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1224136 ~ 1234682 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01224759_01234682.mRNA
ATGAAACAGTATTCAGTTAAACCAGGCAAAATACTTGTGGGGCAACATGTCTTCTCAAAAGCTGGTGAAAAGATCACCAAAAAGTATCAGAGTAGATGCACTGAATTCTCACTGGAAAAAGAGATTTCACATCTGCTGCACACAAAAAACCTAGTGAAGGAAAAGGGAAGCATGCGCAGCCGTATCCCTCGATTTGTCCTCCACCCCTTGCGTACTAAAGCGAAGGAGTCATCTGTATCCAACATGCCACTGTCAGAAGAGGAGAGCAAGGATTTTGACATTAGCTCCCAGCACTCGAAAAGAACCATCAGTCCAAACAGCCTGTCCTCAGATGATACTGGATGCCCAAGCAGTCAATGTGCATCGCCAACCAAAACCCCCTCAGGCTCTGACAACAGCCCACTGGGTTCACCCTCTCTGGGAGAGCGCAAGGTCAAGGTGAAGAGAGTTCGGATGAACGTAGTTGCTGAGTGGAGCACACCCACACAGAAGCACAAGAGAGAGAAGCAACAGCGTGCCTCCATCATGCATAAAGGCAGCGAGACAGATTTCAGCTCATCTAGCAGCACCGGAAGCTACAAGACTCGTGAAACTCTGCCCAGCAACTCCGCAGGGAAGATTTCATCTTCTCGCAGCCGTGGGCCTCACATCAGGAGCCTGCCTGTATTCAAGCCTGCAGGAAGCCCCACCGCCCCTCGTGACGCAGAGCTTTATGCCCCATACAGGACGCCCCCCAAAGCCCCTTCCATCACCAACAGCAGTAGCAACTCAAGCTCTACCAGAAGAGACAATCATGGCATCAAGCCTCCCAATCCAGAGCAGTACCTTACCCCCCTACAGCAGAAAGAGGTAGCCATACGACACCTGAAGACCAAGCTCAGAGACTCACAGAACACAGTCTGTGACCGGGAGTCTGAGATTGAGGAGCTGAAGTCCCAACTGGGGCGCATGAGGGAGGACTGGATAGAGGAGGAATGTCACCGTGTGGAAGCTCAGCTTGCTCTTAAAGAAGCACGCAAAGAGATCAAGCAGCTGCGCCAAGTGGTGGAAACCATGAAGAACAGCCTCATGGAGAAGGACAAGGGCATCCAGAAGTACTTCATCGACATAAACATCCAAAACAGAAAGCTGGAGTCCTTGCTCCACAGCATGGAGTTGGCGCAGAATGGCTGCAACTTACAGGATGAGCCAACGTTGGACTTCTGTGAGTGTCCGGAAAGATCTACTGAAGGCAAGCTGGAGATGGAGCTACATGGTGAAGAACAAGCAGTGGAGGAGATGGCTGATAGTGAGCTGCTAGCCAGTGACGAGATGGCAAACCGAGCAGAGATTCTGGAGCAGGTTCTCATGTCCACTGCAGTCGATTCCAGCCAGGACGGTGGCACCAAGATCATTCCCCAACCAGGACTGTCCACCTTGGAGCCGAGTGTCTCGGAAAAGAGCACAGAGGAGCATATCTCAAACGACCCCTTTGGTGCAGAAGATAAAGGTGTCCAGACGGATGACATGATCTACACTGCTGATCTCCAAGCTCTCCTTTTCCAGCTGCTAAAGCTCCAGGGTGGTGGCTTCTCTGGCCTCCTTATTACTTCTCCCCACCAATCCCAGGAATTACCTTCAGCTCAGGTTCCCAAAAAGTTTGAGGACTTGCCTGAAGCACAAAAACCCATAAAGAAGGAGAAATTACCTAATGCACAAGATGAAGAAGTCAAAGATGTTGGCCTCATTTGCTCCAGCACTGCCCAAAATGCTCCTAGTGATTCCGGTCTGTGCATTTCCGAGTCCGAAATGAGTCCCCAGTTCATGGAGGAGCTGAATTTCGACCTGAAGAGTTCAAAGAACACATCTAGCATGGCAGTGGTGGAGAAAAGCCACTGGAGCAACAACTTCTTGGTCGATCTGGTTGCTGTGGCAGCACCTGTTCTGCCCACCGTAGCGTGGCTCTACTCGCAGCACGGTTTGGTTGGAGGGGCTCCAGTGTACAACATTGCAGCTTTGATTCGAGGCTGTTGCGTTATGGGATTGCACTCACTCCGCCATGTCTCTCACGGGCCAGACACTTAGTGGCCCTCACCCACATGTACAACAAGAGCACTTAAACTTCATCTTCAAGTAGAAATTGTGTTTTTGCACACCTGTGATTATACGCATACACTTATTTTCGTTTAGTTGTGACATTCCTACTTTGCACTGTGTGTTTTTGCCAGCTGAGGCACAATGGATGAATTTAAGGGGATATAAAGGGACTTTTGTCTTTTTTGTTTATTGCCCTTATATTTGTGTATATATAAATATATATAAATATTTTTGCAGAATCTGATCATGTAGGTGGTTATGTTGCTCAAGTCTTGTTCTTTGCTGACTGCTATTCCCTGCTTTTTGACTGGAGTGGCATTTGGAGTGACAATAGGGGTTGACTGTCAGTTGACCGTTGTTTTTGTTGTAGTTAAAATGTCACTTGTGTTCCAAAAGAACTAAAACCTTCTGCCAAAGCTTAAATGTGTTCAGCGTTTTGTGTTAAGTGAAACCGTATTTCTCTCCTTGGATTTAGAGCTTTTACATGTTGCTCTGTAAACTGACGTTTTCCTGAAAGGCAGTACTTGCAAAAGCGAACACTTGTTATGTGCCTAAGCTATGTGCAATATTTTTGTTTATATCAAATGTATATCATTATATTTATTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01224759_01234682.mRNA True 2687 mRNA 0.48 7 1224136 1234682

Neighbor

gene id symbol gene type direction distance location
CI01000016_01202843_01213613 ZDHHC3B, ZDHHC3, ZDHHC3A, MGC82349 coding downstream 10523 1201258 ~ 1213613 (-)
CI01000016_01199558_01199730 TMEM42 coding downstream 24406 1199545 ~ 1199730 (-)
CI01000016_01195747_01197970 KIAA1143 coding downstream 25074 1195717 ~ 1199062 (-)
CI01000016_01134396_01182271 OSBPL10 coding downstream 41865 1133814 ~ 1182271 (-)
CI01000016_01088942_01089316 NA coding downstream 134797 1088552 ~ 1089339 (-)
CI01000016_01341525_01342959 ENY2, ENY2.L coding upstream 106665 1341347 ~ 1343558 (-)
CI01000016_01396291_01399075 TRHRA coding upstream 160033 1394715 ~ 1400954 (-)
CI01000016_01476991_01494147 NA coding upstream 242155 1476837 ~ 1494994 (-)
CI01000016_01577710_01581289 NA coding upstream 341724 1576406 ~ 1581679 (-)
CI01000016_01653014_01654553 NA coding upstream 417705 1652387 ~ 1654559 (-)
G94256 NA non-coding downstream 92194 1125042 ~ 1131942 (-)
G94253 NA non-coding downstream 164082 1059288 ~ 1060054 (-)
G94238 NA non-coding downstream 167095 1056355 ~ 1057041 (-)
G94247 NA non-coding downstream 180339 1043578 ~ 1043797 (-)
G94084 NA non-coding downstream 214983 1000424 ~ 1009153 (-)
G94310 NA non-coding upstream 10664 1245346 ~ 1245597 (-)
G94316 NA non-coding upstream 28825 1263507 ~ 1263749 (-)
G94351 NA non-coding upstream 100400 1335082 ~ 1335664 (-)
G94394 NA non-coding upstream 217493 1452175 ~ 1452402 (-)
G94364 NA non-coding upstream 328407 1563089 ~ 1563911 (-)
G94786 NA other upstream 1036154 2270836 ~ 2276275 (-)
G95070 NA other upstream 1750578 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 2400925 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 2631079 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 3678026 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010137 sybu coding NC_007127.7 CM002900.2 39146696 ~ 39168840 (+)
rainbow trout (Oncorhynchus mykiss) G59063 NA non-coding NC_048565.1 CM023219.2 54034526 ~ 54034784 (+)
eurasian perch (Perca fluviatilis) G49183 snph non-coding NC_053116.1 CM020913.1 12383502 ~ 12387224 (-)