CI01000016_01277792_01304615


Basic Information

Item Value
gene id CI01000016_01277792_01304615
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1276928 ~ 1304762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01277792_01304615.mRNA
CCATAAATCCACAGCCTCCTGCTTGGCTGCAAAGACTTATGGGAGGAGGAAGTGTCCCAATCGACAGCCAGAACAACAGCTCATGCATGCAGGTGTGAAATGACAGTTTTATAAGTCAAAGAAATGTCTGTCTATGTGTGTGTGAGTGTGTGAGTGTTTGCATTAGGGGGTGTGTGTGTGCCCAGATGCAAAGCTCAGTAAAAATTCCTTCACATCCACATAGACAAACACACATACACATCCTACTATGTTTGATCAGTTTATGGCAGACCTTTGGCACTGAGTTAACTCCGACAGATTAATGTAGGAGAACCTGCCAGCAGCCCTCTGCCGGAGAATCGGCACCCGGATGAGTGTGTGTATGTGTGGATACATTATGACACATGTGGTAAATTCATAGTCTCTCTCTTTCCATGCTCTGCCTAACCTGACAAATCCAATTATAAGACAAATTATTTTGTCTGGAAGTGTTTGTTTTTGTTTGCTGGAAATTGGCTCGGACTGAGTTTGCTTTATGTTCGTTGTGTATACTTGTGGTGGTCTTCCCGTAAGCGCTTTATCGGGGCTATATGCTGAAGCTGTTTCTTGAATCAGCGGGAGATGGCTTTATTTTAGAGCATTAATCAAAAAGGCTGCTCGCTAAAACGTCACCATTAGTTTGTTTGCATAGAGAAAGATTTGTGTCGCTCTCATTTGAGCCATATAGACTTTTAAAAGACATATTTTGCACTGCATTCATAACTAGTGCTGGCTTGTCTAAATAAAGCCACTACATCTTTGTTGGCTGGCCTTGTCCTTCCACTTCTCTAAAAGATCCCCCATTGTTCTAAATGACAGATGGCTACTTTATCACATTAAGCTACAATGACACTCAAAAGCAAGTATTTTTACAACCTGCAAGCATCAGTGACCAAATTTAAAAGATTGCTCAATGCCGCTGTTGACCTGATTATCGGCCAGTGGACGTGTCTTCGCCAGGCAGCCGGCCCTTTTAAACTCAGCAAGAGATGGGACTCGGCCAAAAGAAAGGATCGCAGAGAGATGGATTGTCAGTTCACGGAATTAAAAAGCAACAGTGAATACAGTCAGAGGGGAGACTGGAATGGCGCTTGGAGGCCAAACTCCATAGCTCAAAGAAAGCAGACCAGAAGTGGCCTCATCCTATGCCCGGTGTTAATGAAGGTTGGAGCATTAATAGGTGGGTGGCGGAGAAAGCCAGTTAATCAGTGTAAGTCTTGGTCCTGTTTGAAGTACCAGACTATGGTGGAGGGGGGACATGGGATGTTGGCCTCTAGGGGGGAATTTAGGGGTCGAGCAAACGCTTCAGCGCTGAACCCGTACAGCTTAAACGAATCAGAACAGCGTGGTGATTGCACACCGGCTTCAGGTGAAATGAAGTATACATCGCTGACCCCAATGCCCTCTGAAGCCCTCGACACTAACAGACGGGGAACCTCTGCGGCCTGGTCTGGAGAAGGCATCTCACCTGGGGCAAAAACCAATTCACACCACCGGCGTAAGAAGCTCACTCATCCACATCCCATTAGAAACCACAGGCAGAGAAAACCAGCTCTCCTGTCCCACGCTTTAATGAAAGTCCAGTTTCCCTTGCCTAAAGGTAACTTGCCCTATTATGCATCCTCTCTGGAAGATATAGTGTTCAGTTTAATGCTCACATATCACTTTCCCAAAAGTGGTGGAGTACAGAGGGATTGGATAGGGCCCTTCTCACAGACTGACATGGGGACTGGAACAGCTAAACCTGGAGCTGGAATCTGCACTGAAGGGGTTTTGGAGGTTGGATGCCAAGCTGTTCTCCTAATGAGATGCATACCAGCATTGAAGCCTGTGAGACAGATTGGGCCTCCTGCTAGCGCGGTCCACCACGGTCAGAGACCTTCCACTGCCCTGCAGGCAATACAGCCACAGTTTCACTCTCTTCCTATCATGCTCCATTGCTGCTTACCTTGTGCTCCGCCCACCTCTGCATGCTCGACATCCTTACAGCGCATTTGGGGAGCACAAGCTATGGATTGTCTGTCTAGAGTGGGAAAAGGTCTGAATCTTTTCACTCCAGATATCGACCCAGCTGGAGCGTGTCATGTTTTGATGAAGGGGGAAACATGCTTGGAATATCCCCTCTCTCTCTCGCTCACACACGCTCAGAAGTATGAAGGTACAGCAGGTGTTGCTTGTGGAGTGTGGAATGGTGGTGAGGCCTGTGCCATTCTCTTAGCTGGCCGAGATGGCGTAATGGGAACTGCCAGCTGTGATGGTAATTACAGCACCACTGAAGAGGATGGGGGCTGTTTTTCTTCAGGGGGCTTGCAGCTGAACTGATTTTTCATTTACATGTTTTAAATAAGATGAAGGACCTCCCCAAATGGGTTTGAGCTGTGCATTAGCGAGAGTGGATACATGCTATTTTTCAAGTGTTGTTCTTTGTCACCGGCGGATTGTTTTAACGCACCTCCATGCTTGGATCTA

Function

NR:

description
PREDICTED: syntabulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01277792_01304615.mRNA True 2487 mRNA 0.47 13 1276928 1304762

Neighbor

gene id symbol gene type direction distance location
CI01000016_01253760_01273553 NA coding upstream 2975 1253406 ~ 1273953 (+)
CI01000016_01238151_01242924 GDF6, GDF6A coding upstream 33968 1237991 ~ 1242960 (+)
CI01000016_01217119_01220858 EBAG9 coding upstream 54991 1217119 ~ 1221937 (+)
CI01000016_01183747_01191853 GPD1L coding upstream 84070 1183747 ~ 1192858 (+)
CI01000016_01122656_01129008 STT3B coding upstream 147920 1122656 ~ 1129008 (+)
CI01000016_01408124_01408966 TMEM74 coding downstream 101874 1406636 ~ 1409165 (+)
CI01000016_01476236_01476607 NA coding downstream 171474 1476236 ~ 1476762 (+)
CI01000016_01509959_01560806 EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA coding downstream 205197 1509959 ~ 1561122 (+)
CI01000016_01563821_01567070 NA coding downstream 257636 1562398 ~ 1567529 (+)
CI01000016_01588035_01601276 RSPO2 coding downstream 282308 1587070 ~ 1601909 (+)
G93497 NA non-coding upstream 14721 1261920 ~ 1262207 (+)
G93449 NA non-coding upstream 41082 1228198 ~ 1235846 (+)
G93476 NA non-coding upstream 64307 1212344 ~ 1212621 (+)
G93442 NA non-coding upstream 78555 1195710 ~ 1198373 (+)
G93434 NA non-coding upstream 192161 1084467 ~ 1084767 (+)
G93483 NA non-coding downstream 35690 1340452 ~ 1342798 (+)
G93547 NA non-coding downstream 89936 1394698 ~ 1449594 (+)
G93598 NA non-coding downstream 116858 1421620 ~ 1449437 (+)
G93567 NA non-coding downstream 156838 1461600 ~ 1461978 (+)
G93565 NA non-coding downstream 157355 1462117 ~ 1469355 (+)
G93406 NA other upstream 349396 905400 ~ 927532 (+)
G95439 NA other downstream 2557413 3862175 ~ 3862305 (+)
G95648 NA other downstream 2967874 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 3529796 4829592 ~ 4837457 (+)
G95792 NA other downstream 3915118 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 4101107 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010908 NA non-coding NC_007127.7 CM002900.2 39000013 ~ 39024997 (-)