CI01000016_01476991_01494147


Basic Information

Item Value
gene id CI01000016_01476991_01494147
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1476837 ~ 1494994 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01476991_01494147.mRNA
AGACTCTCTAAGCTTATGAATTTACTCCAAAGATAGATAAAACCAAATCCAATTTAGTTTAGTGGATAGAACAAGAGAGAAAATTAGTTATAATTATTGATATTATTATATATTATTTATTATTCATATTAAAATTATTTAAAATATTTAATTTTAAATCATTAAAAATAATGAATAAATTATTTATAATTATTAATTATTTCATTGCCATTGATTTTTGGCAGATTTTGTTTTAAAGTAAAATATATATCCTTCAAGCTGTCTATTTTCCCCCATTATCTTTCTTTTAATAGTAATTAATGTCTTTTTTTTTAATTCGTATTTTTTTAACTGTTCTTGCTGCTGCTCTTTTCTATGTAAGGAAAAACTGTAAGGTCCGTTTTTGTATTGTTTGAATGAAAAAAAGAAAAAAAAAACTGTCTGGATTTGGCCTTTGCCCTTTATTTTTTATTTATTTATTTATTTTTTTTAAATTTTTTATTGTACAAATTTCACATATATTCAACAGATATAAATGTTTCACAGATAATGCTCTGAATAGTTTCATATCATCATGAATCAATAACACTTTTACCTTAGTTATTATATATTGCGAACAGTAACATTCATATCAAAAATATAAAAAAAAAAATATTTCCAGAAATTAGAGGAAAAAAAGAAAGGAGAAAAAAAAAAAAAAAAAAGGGTATACATGTATATTTAAATTAAAGAAGAGGAATTTAAGTCTTTGTAAATGTTTATAGTTCTGATTGCTTTGCCTTTGCCCTTTATTGACCCTTCTCATGGCGTTAACTCTTACGTCACTGTCATCCACCAATCAGCTCACAGAAGGTGGAGCTAGGAAAACATGTCGTCTATATCGGAGCTCTACGATGTTTCTTGGGAAGAGATGCGTGACAAACTCCGTAAGTGGAGAGAAGAGAATTACAGGAACAGTGAGCAGATCGTGGATGTTGGTGAAGAGCTGATAAATGAGCACGCGTCTAAACTTGGAGATGACATTTGGATAATTTACGAGCAGGTGATGATCGCTGCGTTGGACTGCAGTCGTGACGATCTGGCTTGGAGTTGCCTACAGGAGCTGAAAAGGCAGTTTCCAGACAGTCACAGAGTGAAGCGATTAGCAGGGATGCGGCTGGAGGCTCTGGAGAGGTACGAGGATGCCAATAAGCTGTACGACTCAATTCTACAAGATGACCCGACAAATACGATTGATGAGATTCTAATCCGCCTGAAGGTCACTTCTGCGTTGGAACAAGGCGGGACGTTATTTGCGGCTGATTCGAGCTGGGCTATGCAAGTTTATGTGAATGCATATGGCCCATGGCTCTTTGGCAATGTGTTATTTTCACCACTTGAAATGGGTCTTTACTTGCTCTTCCAAATGTTTGTGGGAGACCAGGAAGCATGGCATGAGCTGTCAGAACTCTACATCAATGAGCATGAGTAATGATTTCTTACCTAATTTCTTCTGTTGATTTTTTTTTTTTTTTTTATATACTTGATAGAAGTTGATAGAACATGAGGGTTAATCAAATTGTGTGGGGTCAAATTGACCCCCATACAGAAACAACATAACTAGAACATATACCAGTCTCTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01476991_01494147.mRNA True 1604 mRNA 0.33 7 1476837 1494994

Neighbor

gene id symbol gene type direction distance location
CI01000016_01396291_01399075 TRHRA coding downstream 75883 1394715 ~ 1400954 (-)
CI01000016_01341525_01342959 ENY2, ENY2.L coding downstream 133279 1341347 ~ 1343558 (-)
CI01000016_01224759_01234682 NA coding downstream 242155 1224136 ~ 1234682 (-)
CI01000016_01202843_01213613 ZDHHC3B, ZDHHC3, ZDHHC3A, MGC82349 coding downstream 263224 1201258 ~ 1213613 (-)
CI01000016_01199558_01199730 TMEM42 coding downstream 277107 1199545 ~ 1199730 (-)
CI01000016_01577710_01581289 NA coding upstream 81412 1576406 ~ 1581679 (-)
CI01000016_01653014_01654553 NA coding upstream 157393 1652387 ~ 1654559 (-)
CI01000016_01659416_01671969 NA coding upstream 163980 1658974 ~ 1671969 (-)
CI01000016_01689633_01693021 NA coding upstream 194501 1689495 ~ 1693672 (-)
CI01000016_01835869_01947822 TSNARE1 coding upstream 340751 1835745 ~ 1947842 (-)
G94394 NA non-coding downstream 24435 1452175 ~ 1452402 (-)
G94351 NA non-coding downstream 141173 1335082 ~ 1335664 (-)
G94316 NA non-coding downstream 213088 1263507 ~ 1263749 (-)
G94310 NA non-coding downstream 231240 1245346 ~ 1245597 (-)
G94256 NA non-coding downstream 344895 1125042 ~ 1131942 (-)
G94364 NA non-coding upstream 68095 1563089 ~ 1563911 (-)
G94433 NA non-coding upstream 70326 1565320 ~ 1565651 (-)
G94434 NA non-coding upstream 73061 1568055 ~ 1568282 (-)
G94449 NA non-coding upstream 128038 1623032 ~ 1624002 (-)
G94510 NA non-coding upstream 238085 1733079 ~ 1737573 (-)
G94786 NA other upstream 775842 2270836 ~ 2276275 (-)
G95070 NA other upstream 1490266 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 2140613 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 2370767 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 3417714 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010133 emc2 coding NC_007127.7 CM002900.2 38659475 ~ 38729606 (+)