CI01000016_01509959_01560806 (EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA)


Basic Information

Item Value
gene id CI01000016_01509959_01560806
gene name EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1509959 ~ 1561122 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01509959_01560806.mRNA
CGCGTCCTCTTCCGTTGTCAACATGGCGGAATACGATCTTACCACCAAAATCGCCCACTTTTTGGACAGGCATCTCGTTTTCCCACTGCTGGAATTCCTCTCAGTAAAAGAGAAGGCGGCATAGGTTTTACCACGTGCGCGCGTTACGATAGCCGCAATAGTGGTGCCGCACCGATCTACAATGAGAATGAGCTTCTCCATGGAAAGCTGGATCTCCTCAGTGACACCAACATGGTGGACTTTGCCATGGATGTATATAGGAATTTATATCCTGACAAAGAAATACCCAACTCTCTCAGAGAGAAGAGGACTGAAGTGGTGGCTCAACTGAAACAACTTCAAGCAGACACAGAGCCGATTGTGAAGGTGTTTGAGGACCCAGAGACCACGAGGCAGATGCAGTCTACAAGGGACGGGCGTATGCTGTTCGACTATCTGGCTGACAAGCATGGTTTCCGGCAGGAGTATTTGGACACCCTGTACCGATACGCCAAGTTCCAGTATGAGTGTGGGAACTACTCAGGTGCAGCGGAGTACCTCTATTTCTTCAGAGTCCTGGTCCCCGCCACAGACAGAAATGCGCTGAACTCTCTTTGGGGCAAGCTGGCCTCTGAGATCCTGATGCAGAACTGGGAAGCTGCCATGGAGGACCTCACCCGCCTGAGAGAGACTATCGATAACAATACGGTAAGTTCTCCTCTCCAGTCTCTCCAACAAAGGACTTGGCTGATCCACTGGTCACTCTTCGTGTTCTTCAACCACCCCAAAGGGAGAGACAACATCATCGAGCTTTTCCTCTACCAGCCACACTTTTATTTGCAGAGCCGTGGCCACGAAGAGCAATCAGACCCCATAAATCTGAATCTGAGTGTAATTTACTGCATTAGATACACTGCGTTTTATGTACCACAACAGTATTGCGTTCTTGGAGGGTACCTAAATGCTATTCAGACCATGTGCCCACACATACTGCGCTATCTGACCACAGCTGTCATCACCAACAAGGACGTCCGCAAGCGTAGGCAGGTGCTAAAGGATCTGGTGAAAGTCATCCAGCAGGAGTCATACACCTACAAAGATCCCATCACAGAGTTTGTGGAGTGTCTCTATGTGAACTTTGACTTTGATAGTGCTCAGAAGAAGCTGCGAGAGTGTGAGGCGTCACAAACAGCCTATCCTTCTGTTTTGGGCCCTGAAAGGGGTCTTAAAGCTCAGGCGGTCTTTGCGAGCCGCAGTGTCATGGGCAGCTGTGGAAGTGGGCCCCTGAAAGAGCCTCTGACTCACCATTTGTCATGTTTTTATGATAGCCGAGACAGCAGGGGCTCGCACATTTCTTCAGCTGAGTGGAATGCACTGCACTATTTGCGTTTTGACTGCAAGGTGCTGGTGAATGATTTCTTTCTTGTGGCGTGCCTTGAGGATTTCATCGAAAATGCTCGTCTGTTCATCTTCGAGACCTTCTGCCGAATTCACCAGTGCATCAGTATAAATTTTTATTACCCAGTGTGCTGGAGGAAGCATGTCCAGAGACCGGCTGCCAGCACCTCAATCTCACACATGGAGACACGCATTCAGAACCAGACATCCCAGGCACATCCACCCATCTGTTTTAAAGCATGTCTAAAGGGTCTACATATTGGCCCTTGGGAGAATCTTAATGGACTCTCCGGTCTGCGTTCGGCTGAATATGGCAGGTGTTTTATTACCACTTTACTCTGGTTGCGCTTTTTTATTGCCCCTTTTACGGTATTTATACGGCATCGTAGGCTTTCAGAGAAGACATGCAATGGTTTCAGTCCACAACATTTTCCATTGGTGGAAAAGAAGTGGTCTGCATGGAAAGGGAGTCTCGTTGCAATTGAATCCATTTTCTTGTCAAAGGCGACAAAGGTTAGTAGCTCAAAGGAGTCACCTGAAAGACAGCGTTATGTCTGTTTAGAGGGTATAGAGGATTGGAAAACCTCCATTTTTGGTTTACAAGTGCATGTCATTGGTACATTACGCAGAAGTCCTCTGCAACTAATTGTGGGCTCAAATGAAACATATGCAAGTTTTGTAGCAGTTTTATTATGTTTACAGTTGTTGGCCTTGAACGGTATGCTGGCCGATAAGCTGAATATGACTCCCGAGGAGGCAGAAAGATGGATCGTGAACCTCATTCGCAATGCCAGGCTGGATGCCAAAATCGACTCCAAACTGGGACATGTGGTGATGGGCAACAATGCCGTATCGCCATATCAGCAAGTGATCGAGAAAACCAAGAGCCTTTCATTCCGCAGCCAAATGCTGGCCATGAACATCGAGAAGAAGCAGACCAACGCAAACAGGAATGAGCCCTGTAGTTTACACACGCAAATGATCTATCCAGAAGAATGCCGAGCGGCAATCAGCCCAGAACTGTCTTTACACGGCGTAAACCAACTCCAAACTGGGCAGGTCAGGAGACTGGCTTTTGAGTGGAACTTTGCAGACCGTACTCTCCCATCTAACCTTCCAGCATTCCCATATTGCGGCCGAACATCCTGTTCTCCCTCTCGTGTCCCTCAAAGGAGCGAGACAGAGGCCTTATTTTTGCACTTGGGTTCAATGCATCTGATGGGCACGTCAGCTGCGCTAGACAATCAACGTAATGCCTCCCCACCTTTCCCATCTCATCACATCTTCCGTGCATGACACCTACAGTCTATCGCTCTATACGTTTTCTATTTCTATCCCTACCGCTCGCAGACGCTGCAGGCTGGGATTCGAAGCGTGTCTTAATGTCTGCTTTGGCCTCTCTATCAGCTGACATGTTTATGGGCCCTGTCTCTCTGGACGAGTGAAGAGGGGGCTTATAGCTGCCACAGCGCTCGGGCTCCCAGCCAGACATCTAAAACAACTGACGTCACCTTTACTTTCCCAGCGAGCGAGGGAGCGAGCAGGCGGGGAGGAAGGGGGGGTGGGCTAAAGTGATTGGTTTACCGGTCCTGTGCCATGACACATTACGAAA

Function

symbol description
eif3ea Predicted to contribute to translation initiation factor activity. Acts upstream of or within camera-type eye development; embryonic viscerocranium morphogenesis; and pigmentation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Is expressed in ceratobranchial cartilage; eye; female organism; and gut. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).
eif3eb Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).
eif3e Enables protein N-terminus binding activity. Contributes to translation initiation factor activity. Involved in positive regulation of mRNA binding activity; regulation of gene expression; and translational initiation. Located in cytosol and nucleus. Part of eukaryotic translation initiation factor 3 complex. Colocalizes with PML body.

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K03250 EIF3E, INT6; translation initiation factor 3 subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01509959_01560806.mRNA True 2989 mRNA 0.49 23 1509959 1561122

Neighbor

gene id symbol gene type direction distance location
CI01000016_01476236_01476607 NA coding upstream 33197 1476236 ~ 1476762 (+)
CI01000016_01408124_01408966 TMEM74 coding upstream 100794 1406636 ~ 1409165 (+)
CI01000016_01277792_01304615 NA coding upstream 205197 1276928 ~ 1304762 (+)
CI01000016_01253760_01273553 NA coding upstream 236006 1253406 ~ 1273953 (+)
CI01000016_01238151_01242924 GDF6, GDF6A coding upstream 266999 1237991 ~ 1242960 (+)
CI01000016_01563821_01567070 NA coding downstream 1276 1562398 ~ 1567529 (+)
CI01000016_01588035_01601276 RSPO2 coding downstream 25948 1587070 ~ 1601909 (+)
CI01000016_01656995_01657299 NA coding downstream 95873 1656995 ~ 1658390 (+)
CI01000016_01989129_01990437 NA coding downstream 427902 1989024 ~ 1990995 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding downstream 439087 2000209 ~ 2080896 (+)
G93565 NA non-coding upstream 40604 1462117 ~ 1469355 (+)
G93567 NA non-coding upstream 47981 1461600 ~ 1461978 (+)
G93547 NA non-coding upstream 60365 1394698 ~ 1449594 (+)
G93598 NA non-coding upstream 60522 1421620 ~ 1449437 (+)
G93483 NA non-coding upstream 167161 1340452 ~ 1342798 (+)
G93711 NA non-coding downstream 352675 1913797 ~ 1942317 (+)
G93780 NA non-coding downstream 407416 1968538 ~ 1978432 (+)
G93777 NA non-coding downstream 478467 2039589 ~ 2045283 (+)
G93794 NA non-coding downstream 532830 2093952 ~ 2094182 (+)
G93779 NA non-coding downstream 543784 2104906 ~ 2105133 (+)
G93406 NA other upstream 582427 905400 ~ 927532 (+)
G95439 NA other downstream 2301053 3862175 ~ 3862305 (+)
G95648 NA other downstream 2711514 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 3273436 4829592 ~ 4837457 (+)
G95792 NA other downstream 3658758 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3844747 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location