CI01000016_01588035_01601276 (RSPO2)


Basic Information

Item Value
gene id CI01000016_01588035_01601276
gene name RSPO2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1587070 ~ 1601909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_01588035_01601276.mRNA
CTATTAAAGGCTCTGATCTCAAGTAGTCAAGCATTTTTTCTTAAAATTTTAAGTCCTTTATCAAATTTGAAAATTAGAAATCTAGATTAAAGACTAAGGTTGTCTTATTCTGCCCCCTAGTATATTTTGAATACAATTTTGGGCCTTGTTCAACTAAACATTAACATAAACATGACGACATTTGCAGTAAGCAAATACAGTGACCTAATGCTCACTGGTTTTAAGGTACATTCTGGGTATTTCTAGTGAGCAAATTTTTTGGTGCGCAAAGATATTGACAAGAAATGGCTCATTTAGGGAACAGATTGAGGAGTATGAGAACGATAAAATAAATATTATAATTATTTATTTATCTTTTTAACTGTAACTCTGATGCACCAATATGTATTCAGACTGAGAAAAGATGAGGGAAAAAGGGAATGGGAAAAAGGTCAGCGAAATGCATGATATTTTATAAAGCATTGTGGTGGGTCGTCCACTTCGGACTGTTACTCTATCTTGGTTTGTGATATTTAAAACTTGGCTCCAATCAATAGCAATGTCTCTGGTTTGCAGCTATTGTGTGCGCCCAAGGACATTTTCCTGTAAAGAGGACGCTAAGGAGCTTACATTAAGAGACCTTTATTGTGAAACGGTATGGTCGTTACTGGCTCCTTTGTCTTCTACCAGCAACATGATCCTTCTCGGAGTCAATGCGGTTTTGGGCTTTCAGCGGCTGTCTGAACTCTACATACAGGAGTTGAGCTTTGAATCAAATCACTGTGCTGCGAAAACGTCAGGCCTCACTAGTGTCATGGTAATGACAGTTTCTTTAGTCAATGAAAGTTTTATGTGTCAATGAAAATGTCTTAGACAGTTCTATAGCAGCACACGTTTACCATTCAGCAGAGCACTTTGTAGTTAGCTTGCTCTGTGGTGAAGCGGTTACAACTTCACGTTGCTGGTTTGATTGCAAAAAAGGAGTCATGAACTACCACCATGCTCCCTTGAGCAAGGCACTTAACCTCACTAGCTATGGAGCTTATCCCATTTGTAAAGGCTGCTCGGTGTGTTCAAAGGACAACGGGTGTATGAACTGCCAGCCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTACGGCGAGTGTCTCCACGCCTGTCCGTCAGGCTACTACGGCATGCGTGGGACAGAGATCAACATGTGCTCCAAATGCTTTGCAGAATCGCCGGGCCTGAGCGAAAACAAAGGCAAAGAGGAGACAGGTTTGCACTACATCAGTGCAGACTCTTCCGCTGGAGCCGTGGGGCCAGCGCATCGCCCTGTTGGTGTGGCTCATGTAATTTTGCTCAGCCTGACATGCTATTTGCAGAGTCACAGCTTGATGACATGCTGGCACGCTGCCCTTGATATGCTGTGGCAAGGGTGTAGGATAGATAACTGTGAGGCCTGCTTTAGCAAAGACTTCTGCACAAAGTGCAAGCCTGGTTTTTACTTGCACAAGGGCCATTGCTTCGAAAAGTGTCCGGAGGGCTTTGCTCCGCTGGAGGACAGCATGGAGTGTGGAGAGGGTTGTGAGGTGGGCCAGTGGAGTGAGTGGGGGACCTGCACCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCCGAACACGGCATATTGTGAAGAAACCACCAAAGGACACAATACCATGTCCAACCATCGCAGAGTCCAGGAGATGCAAAATGGCTATGCGACATTGCAGGAGAGTGGAATTCCTTAAAGTATGAAGTGCAGGTTTCCTCAATGGTACTCTGTTTCCTTTCTCTATAAGAGAGTTATTTGCGGTAGGTGGTGCATGTATTTTACCACTAAAACGAGAAGTCAAATCGGAGGGAAAATATTTTTTGAGTAAATAGAGCCAAGGAAACATATTTTATAAAGTGTTTAGTTTTAGAAGAGATGGGCCAAGTTTACTCGTGGAAATAATTGCCGTATTCAGGAGGGCTTATCAGGAAAACTCACGATGATAATTAATCGAGACGTTTTCTCGCAGCTTTTTTTCATTCTGCTCACCTGAACAAACTTAAATCTTTTGCGGTCACTGACTTATGATACTGTCACAATGAGTACACATGTAATTTCAATTTTGGAGGTCAGTAAAGGACAACACTTTCACATTGAGAAAGTTTTTGACTGATTATGGAAAGGTTAATTGTCAACCCAGAGACCTGAGGCAATACAAAGCTGAACTGTTCCATTGTTTATTTAGGTACCTCAGTCTCTTACTGTATCTAAATTTCCATAACGTCCACCTTAGTATCAGGTCACAGCCACTGAATTTTGCTCCATGAGCTATTCGTTTTGAGAAGCGTATCGCTAAAGTTGAATCCATTCGTCTTCATTTAAATCATTTGGAAGAA

Function

symbol description
rspo2 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

GO:

id name namespace
GO:0033336 caudal fin development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_01588035_01601276.mRNA True 2396 mRNA 0.42 7 1587070 1601909

Neighbor

gene id symbol gene type direction distance location
CI01000016_01563821_01567070 NA coding upstream 19541 1562398 ~ 1567529 (+)
CI01000016_01509959_01560806 EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA coding upstream 25948 1509959 ~ 1561122 (+)
CI01000016_01476236_01476607 NA coding upstream 110308 1476236 ~ 1476762 (+)
CI01000016_01408124_01408966 TMEM74 coding upstream 177905 1406636 ~ 1409165 (+)
CI01000016_01277792_01304615 NA coding upstream 282308 1276928 ~ 1304762 (+)
CI01000016_01656995_01657299 NA coding downstream 55086 1656995 ~ 1658390 (+)
CI01000016_01989129_01990437 NA coding downstream 387115 1989024 ~ 1990995 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding downstream 398300 2000209 ~ 2080896 (+)
CI01000016_02220464_02221013 NA coding downstream 618555 2220464 ~ 2221030 (+)
CI01000016_02235073_02261683 CEP162 coding downstream 633164 2235073 ~ 2262308 (+)
G93624 NA non-coding upstream 33044 1496393 ~ 1554026 (+)
G93565 NA non-coding upstream 117715 1462117 ~ 1469355 (+)
G93567 NA non-coding upstream 125092 1461600 ~ 1461978 (+)
G93547 NA non-coding upstream 137476 1394698 ~ 1449594 (+)
G93711 NA non-coding downstream 311888 1913797 ~ 1942317 (+)
G93780 NA non-coding downstream 366629 1968538 ~ 1978432 (+)
G93777 NA non-coding downstream 437680 2039589 ~ 2045283 (+)
G93794 NA non-coding downstream 492043 2093952 ~ 2094182 (+)
G93779 NA non-coding downstream 502997 2104906 ~ 2105133 (+)
G93406 NA other upstream 659538 905400 ~ 927532 (+)
G95439 NA other downstream 2260266 3862175 ~ 3862305 (+)
G95648 NA other downstream 2670727 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 3232649 4829592 ~ 4837457 (+)
G95792 NA other downstream 3617971 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3803960 5405791 ~ 5407963 (+)

Expression


Co-expression Network