CI01000016_02337039_02343109 (POGZB)


Basic Information

Item Value
gene id CI01000016_02337039_02343109
gene name POGZB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2337039 ~ 2343109 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02337039_02343109.mRNA
ATGGCGGTTGATATTCCAGCTGAGCCTAAGACCGTGGTGATCCCAAACCTACCACCCATTGTAAATACGGCAAACACTGTTCCGCTGATCACAAATACATTGACTCAACGCGTGGTTCCTGCTGCTGTGCCGGCAGATATTCCTAAAGCAGTGCAAGGGCAGCAGGTCTTTTTAGCATCAGGAGGAGGGGGGCTGGGCACTGTGGCTCTGTCGCAGGTTCTTCTGCCTGGCACATCTCCTATTGGCAATGCCACCAACACCCAGCCGATTTACTTTACCACACAGGGTCTTCCTGTGCATAATATCCACCCTGCCCAGCCTGGCCAGAGCCCAATGAGTTTGGTGCTGAATGTCCAACAAGGCCAGACTGTTCGACCCATTACATTAGTCCAAGCACCTGGGACACAAATTTTTAAACCAGCCGTTGGAGCAACCCAAATAATTACCCAGCCAGCTCAAATAAGGGCCGGAGCGCCGGTCGCAAACAGGGCCCAAACGCCTAGCACTTTTAGCACGGTGCAGATCCCTGCTACTCTCACTATTCGTACCACAACAGCGGTCGCCCCACCTGCAGTCAATTCACTGGCCACCATGTCCTCTACAACCCTTACTCAGCCCTCCGCAGCACGAACCACAACTAAAATTGTGACAATAAAGCCAGGAAATGGACCCTTGGACATGCAAAACATCATGAGCCTTGTGAAATCTGTTAACCTTCCCGGTGGGGCTCAAGCACAGACATTTGTTGTCATGAGCAACCAAAAAACCAATAACGGCACTGTTGTTTCCTCTGCTGTCCCTGTCATGACACAAAATGTTGTCCAAACAATCCCTGTTACACATACAACACCATCAACAATCTCTAATTCGTGTGCTCGTTGTGGCGCTCAGTTCAAAATGATCGAGGCCCTACGGAGTCATATGTGTTTCTGCTGCCCAGATCTTGTCCAGATGGCAGACACAAGCAGTACAGCAACTGCTGTTAACACTCCAGCCACGCCACCTAAGAGTGTCTCTGTTGTGCCTAGTGTCAAGGTGGATAGCCCACCTACAAAGGCTGGAGATACCCAGCCCAGACTTGTCATGCTGGTGGATGATTTCTACTATGGCACATTTGAGGGGAATCGAGTCTATGTACCAATGGACAACTCAAAAGAACCATTATCATTCAAATGCCTCTCCTGTAACAAGAGACTGAAGAATAATGTTAGGCTTATGAATCATATGAGGTACCATGTTGAGTTGGAGCAGCAAAATGGGGAGATGGACACGCACACGTCCTGCCAGCACTGTTTCCGCCGCTTTCCCACACCATTTCGTCTTCAATGCCACCTGGAGAGTGTCCACACTGCCATTGAGTCATCTACCAAGTGTAAGATATGTGAGTGGTCCTTCGAGAGTGAGCCAGTGTTCCTGCAGCACATGAAGAACACCCACAAACCTGGAGAGATGCCTTATGTGTGTCAGGTGTGTGAATACCGCTCCTCCTTCTACTCGGATGTGTTTAACCACTTTCGTACCTGGCATGAGGATACCCGCCACCTTCTGTGCCAGTACTGCCTCAAGGTTTTCAAGCATTCCACCAGTTACCAGCAGCACTATATTCGTCATCAGAAGTCAACGGTTTACCACTGTAACAAATGCCGTCTCCAGTTCTTGTTCACAAAAGACAAAGTTGAGCATAAAATCAACCACCACAGGACTTTCCGAAAGCCTCGTGAATTGGAAGGACTCCAGCCTGGGACAAAAGTGACCATTAGGGCATATGTTGGGACAAAGAAGTCACCAG

Function

symbol description
pogzb Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in White-Sutton syndrome. Orthologous to human POGZ (pogo transposable element derived with ZNF domain).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02337039_02343109.mRNA True 1789 mRNA 0.49 12 2337039 2343109

Neighbor

gene id symbol gene type direction distance location
CI01000016_02235073_02261683 CEP162 coding upstream 74731 2235073 ~ 2262308 (+)
CI01000016_02220464_02221013 NA coding upstream 116009 2220464 ~ 2221030 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding upstream 256143 2000209 ~ 2080896 (+)
CI01000016_01989129_01990437 NA coding upstream 346044 1989024 ~ 1990995 (+)
CI01000016_01656995_01657299 NA coding upstream 678649 1656995 ~ 1658390 (+)
CI01000016_02355737_02362570 SELENBP1, SBP1 coding downstream 12628 2355737 ~ 2363246 (+)
CI01000016_02367430_02368661 PI4KB coding downstream 24321 2367430 ~ 2368687 (+)
CI01000016_02374077_02383616 PI4KB coding downstream 30834 2373943 ~ 2384488 (+)
CI01000016_02385791_02400026 MYO1EB coding downstream 42682 2385791 ~ 2400452 (+)
CI01000016_02406070_02411794 PRUNE coding downstream 62961 2406070 ~ 2412306 (+)
G94726 NA non-coding upstream 3447 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 65905 2199008 ~ 2271134 (+)
G93779 NA non-coding upstream 231906 2104906 ~ 2105133 (+)
G93794 NA non-coding upstream 242857 2093952 ~ 2094182 (+)
G94729 NA non-coding downstream 14379 2357488 ~ 2358108 (+)
G94848 NA non-coding downstream 160018 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 165534 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 201642 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 348574 2691683 ~ 2692011 (+)
G93406 NA other upstream 1409507 905400 ~ 927532 (+)
G95439 NA other downstream 1519066 3862175 ~ 3862305 (+)
G95648 NA other downstream 1929527 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2491449 4829592 ~ 4837457 (+)
G95792 NA other downstream 2876771 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3062760 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010123 pogzb coding NC_007127.7 CM002900.2 38119004 ~ 38136670 (+)