CI01000016_02355737_02362570 (SELENBP1, SBP1)


Basic Information

Item Value
gene id CI01000016_02355737_02362570
gene name SELENBP1, SBP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2355737 ~ 2363246 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02355737_02362570.mRNA
CTTCAACCTGTTCAGGATGTGGACCAGGATATAAAACCCCTCTGGATGCTATGAAAGGTCCTCGAGAAGAGATAGTCTACCTGCCATGCATTTATCGCAACACAGACATCCAGAAACCCGACTATCTTGCAACTGTTGATATCAATCCACAATCTCCCAATTTTTGCAAGGTGATTCACAGGTTGCCCATGCCCAATCTGAAGGATGAATTGCATCATTCTGGTTGGAATGCCTGTAGCAGTTGTTATGATGATCCCTCCAAAAGGCGCAATCGTCTCATTCTGCCTTCCCTGATCTCCTCCCGTATCTATGTCGTTGATGTAGGGACGGATCCTCGGGCCCCACGGCTTCACAAGATGGTCGAGCCCACAGATCTGTTCTGGAAATGCGGCCTTGCCAACCCCCACACTTCTCACTGCTTAGGCAGTGGCCAAATCATGATCAGTGCCATGGGTGATCCCTCTGGCAATGGCAAGGGTGGTTTTGTGTTGCTGGATGGTGAGACTTTTGAAGTCCTTGGCAACTGGGAGCAGCCAGGTGAAGCAGCACCGTTTGGTTATGACTTCTGGTACCAGCCTCGCCACAATGTCATGATCAGCACCGAGTGGGGAGCACCCAAAGCTTTGGGAAATGGCTTTAACCCTGCAGATGTAAAAGCAGGTCACTATGGGCAGCGCCTCCATGTGTGGGACTGGACCACACACAAACGGATTCAGACTCTGGATCTGGGGGAAGAGGGTGCTATTCCTCTAGAGATCCGATTCCTGCATGACCCTGCTGCGGCTGAAGGATTCAAAGGGGACTGGGCTGCAGAGAAGGTCATCAAAGTTCCTAGTAAAAAAGTGGAAGGTTGGGCTCTTCCTGAAATGCCAGGTCTCATTACAGACATCTTGATCTCATTGGATGATCGCTTCCTCTACTTCAGTAACTGGCTGCATGGAGACATTCGACAGTATGATGTCACTGACAGGAGGAATCCACGTATGGTTGGTCAGGTCTTCCTTGGAGGCAGTATTTTGAAAGATGGACCAGTGAAAGTTTTGGAGGACAAAGAACTGGACAGCCAGCCAACCCCACGGATAATAAAGGGAAAGCGGGTGCAGGGAGGCCCCCAGATGCTGCAGCTGAGCTTGGATGGAAAACGACTCTATGTCACCACTTCTTTATACAGTGCCTGGGACAAGCAGTTCTACCCTGACCTTGTCAAGGAAGGGTCAGTCATGATGCAGATTGACGTGGACACAGATAAAGGTGGCCTGAAGCTCAATGAGAATTTCCTTGTGGATTTCGGAGCAGAGCCAGAAGGTCCTGCACTTGCTCATGAGCTCAGATATCCTGGTGGAGACTGCACTTCTGATATCTGGCTTTGAAATTGGGGCCAAGCCATCGTGTTCCAAGGAGCAGAATTATTATTCCCATATTCTCACAATTGAGTGCAGATATATCATCATTATGATCATGTTTAGCCTATGTATGTACCAAATCCTTAATCATATTATGTGTCTATTAACGATTCCAAGACTGAATTATGTTGTGAATCACATCTCAACTACAAAAACTAAATTTCATTGTCTTTGTACCCTTTCTACTATTTAAAAAAAAAAAATACATATTATGTATCCCAGTGAACTCAAAGGCTTTGTCATTTGTTGTTGTAATGGCTTTCCAAATCATTAGAATTGCAAAGCAGATTTTAAACACATGATGCAAGTGCACACAGAGAGTACACGCTCACCACATATTTTGAAGTATCCTGTTTCAAAAAATGTTCTAACATAAAGCAGTCAATTATGTTGTATTTTGGTTTTCAGTGCTTAGAAACAAAATATGGACATGTAACAACTGTAATAGCGTGTATATTTTTACATATTATTTTAAGGCGTATCATCAAGCTGCAGAAAAAGAGAACAAATGCAACTTTTTTTTAACAACGCAAACAATTTTCAAGGAGTTTAGTTTAGTTTATTTCCATTCATAATATACAAGTATGAAAAGTTATCTGCCCAAATCTGCTGATAAGGACAATGATTAAAGACAAATACAACA

Function

symbol description
selenbp1 Predicted to enable methanethiol oxidase activity and selenium binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in cytosol; membrane; and nucleus. Is expressed in several structures, including brain; cardiovascular system; digestive system; endoderm; and pleuroperitoneal region. Orthologous to human SELENBP1 (selenium binding protein 1).
sbp1 Enables eukaryotic initiation factor 4G binding activity and mRNA binding activity. Involved in negative regulation of translation in response to stress. Located in P-body; cytoplasmic stress granule; and nucleolus.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17285 SELENBP1; methanethiol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02355737_02362570.mRNA True 2046 mRNA 0.44 11 2355737 2363246

Neighbor

gene id symbol gene type direction distance location
CI01000016_02337039_02343109 POGZB coding upstream 12628 2337039 ~ 2343109 (+)
CI01000016_02235073_02261683 CEP162 coding upstream 93429 2235073 ~ 2262308 (+)
CI01000016_02220464_02221013 NA coding upstream 134707 2220464 ~ 2221030 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding upstream 274841 2000209 ~ 2080896 (+)
CI01000016_01989129_01990437 NA coding upstream 364742 1989024 ~ 1990995 (+)
CI01000016_02367430_02368661 PI4KB coding downstream 4184 2367430 ~ 2368687 (+)
CI01000016_02374077_02383616 PI4KB coding downstream 10697 2373943 ~ 2384488 (+)
CI01000016_02385791_02400026 MYO1EB coding downstream 22545 2385791 ~ 2400452 (+)
CI01000016_02406070_02411794 PRUNE coding downstream 42824 2406070 ~ 2412306 (+)
CI01000016_02415346_02420145 BNIPL coding downstream 52100 2415346 ~ 2420145 (+)
G94726 NA non-coding upstream 22145 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 84603 2199008 ~ 2271134 (+)
G93779 NA non-coding upstream 250604 2104906 ~ 2105133 (+)
G93794 NA non-coding upstream 261555 2093952 ~ 2094182 (+)
G94848 NA non-coding downstream 139881 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 145397 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 181505 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 328437 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 370502 2733748 ~ 2734245 (+)
G93406 NA other upstream 1428205 905400 ~ 927532 (+)
G95439 NA other downstream 1498929 3862175 ~ 3862305 (+)
G95648 NA other downstream 1909390 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2471312 4829592 ~ 4837457 (+)
G95792 NA other downstream 2856634 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3042623 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010124 selenbp1 coding NC_007127.7 CM002900.2 38138246 ~ 38157299 (+)
rainbow trout (Oncorhynchus mykiss) LOC118962653 LOC106574568 coding NW_023494230.1 JAAXML020000645.1 28726 ~ 36771 (+)