CI01000016_02367430_02368661 (PI4KB)


Basic Information

Item Value
gene id CI01000016_02367430_02368661
gene name PI4KB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2367430 ~ 2368687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_02367430_02368661.mRNA
TGGCCATGGGTGACACAGAGCTGGAGCTCTCTCCCGCTCGGCTTGAGGAGCTACAGAAGAGCCCATCCACCTCCTCAACCTCCACTACCTCCTCGCTGTCCCTGCCCTCGTCTCCCTCTTCTGGCCCTCGTCCCCTCACCAGCTCAAGCCCGAGCACCAGCGAAGGCCTGCCCACCTCCAGCCCTACTCTAGATGTCATATCAGAGGGAGTGGGTGAACTCAGCCTGGTCATTGATACCGAGGTGGCTAAAAAAGCCTGCCAGGAGGTGCTTCAAAAGGTGAAGTTCCTGAAGGTTGATGGAGATGTATCTTCAGCCACTTCAGAGCCCGTTTTGGTGAACGGTACATCGCACCCTGAGTCCACTGATGGAGGAAAACCTCCCAAGATCACCACAGAGGAAGCAGAGCCTGTGAAGAGCGTGCGGCGGCGTCAGAAGAACAACTCCTCCAAGCAGTCCTGGCTCCTGCGTCTCTTCGAGTCCAAGCTGTTTGACATCTCCATGGCCATCTCCTATCTTTACAATTCCAAGGAGCCCGGTGTGCAAGCCTACATCGGCAATCGGCTCTTCAGCTTCCGGAACGAAGACGTAGACTTCTACTTGCCCCAGTTGCTCAATATGTACATCCACATGGACGAGGATGTGGGCGATGCCATTAAGCCCTATGTGGTGCACCGCTGCCGGCAGAGCATAAATTTCTCCCTGCAGTGCGCCTGGCTGCTGGGGGCCTACTCCTCTGACATGCACATCTCCACGCAGCGCTACTCCCGTGGCACCAAACTGCGCAAACTCATCCTGTCAGATGAGCTCAAGCCCTCCAGCCAGCGCATCCGCAGGGAGGTGCCGCAGCCTCCCCCTTCCTGCCCCCCACCCCTCCATCACGGTCAGAGCATGAGCGAACACAGCCTCTCACCCTCCAAACGCACCCACCAACGCTCCAAATCTGATGCCACGGTCAGCATCAGCCTCAGCAGCAACCTGAAGAGAACCGCCAGCAACCCCAAAGTAGAGGCCAGCCAGGATGAGATGTTGTTTCTCAGCTGTTACATGCAAATGAGGAAGGCAAACAGCTCAGATTTGTGTGGTTTCTATGGCTGCGCTGGAAAAGGCGTGTCGATGTGCCACATGATGTGAAGCTAACACTCAGACGAGCTCTGAAA

Function

symbol description
pi4kb Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within semicircular canal development. Predicted to be located in mitochondrial outer membrane and rough endoplasmic reticulum membrane. Predicted to be active in cytoplasm and membrane. Is expressed in brain; head; pharyngeal arch 3-7; and semicircular canal. Orthologous to human PI4KB (phosphatidylinositol 4-kinase beta).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19801 PI4KB; phosphatidylinositol 4-kinase B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_02367430_02368661.mRNA True 1159 mRNA 0.57 2 2367430 2368687

Neighbor

gene id symbol gene type direction distance location
CI01000016_02355737_02362570 SELENBP1, SBP1 coding upstream 4184 2355737 ~ 2363246 (+)
CI01000016_02337039_02343109 POGZB coding upstream 24321 2337039 ~ 2343109 (+)
CI01000016_02235073_02261683 CEP162 coding upstream 105122 2235073 ~ 2262308 (+)
CI01000016_02220464_02221013 NA coding upstream 146400 2220464 ~ 2221030 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding upstream 286534 2000209 ~ 2080896 (+)
CI01000016_02374077_02383616 PI4KB coding downstream 5256 2373943 ~ 2384488 (+)
CI01000016_02385791_02400026 MYO1EB coding downstream 17104 2385791 ~ 2400452 (+)
CI01000016_02406070_02411794 PRUNE coding downstream 37383 2406070 ~ 2412306 (+)
CI01000016_02415346_02420145 BNIPL coding downstream 46659 2415346 ~ 2420145 (+)
CI01000016_02442140_02442481 NA coding downstream 71388 2440075 ~ 2442483 (+)
G94729 NA non-coding upstream 9322 2357488 ~ 2358108 (+)
G94726 NA non-coding upstream 33838 2330526 ~ 2333592 (+)
G94696 NA non-coding upstream 96296 2199008 ~ 2271134 (+)
G93779 NA non-coding upstream 262297 2104906 ~ 2105133 (+)
G94848 NA non-coding downstream 134440 2503127 ~ 2503442 (+)
G94850 NA non-coding downstream 139956 2508643 ~ 2508891 (+)
G94874 NA non-coding downstream 176064 2544751 ~ 2545005 (+)
G94898 NA non-coding downstream 322996 2691683 ~ 2692011 (+)
G94901 NA non-coding downstream 365061 2733748 ~ 2734245 (+)
G93406 NA other upstream 1439898 905400 ~ 927532 (+)
G95439 NA other downstream 1493488 3862175 ~ 3862305 (+)
G95648 NA other downstream 1903949 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2465871 4829592 ~ 4837457 (+)
G95792 NA other downstream 2851193 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3037182 5405791 ~ 5407963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G2737 pi4kb,LOC107588477,LOC107556110 non-coding NC_047595.1 CM018541.1 4925272 ~ 4926988 (-)