Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000016_02991852_02994428 |
| gene name | CITED2, CITED4B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2991220 ~ 2994428 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| cited2 | Predicted to enable transcription coactivator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; immature eye; lens; optic primordium; and pharyngeal arch. Human ortholog(s) of this gene implicated in atrial heart septal defect 8 and ventricular septal defect. Orthologous to human CITED2 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2). |
| cited4b | Predicted to enable transcription coactivator activity. Acts upstream of or within muscle cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including heart tube; mesoderm; nervous system; neural crest; and pharyngeal arch 3-7. Orthologous to human CITED4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000016_02991852_02994428.mRNA | True | 1279 | mRNA | 0.48 | 3 | 2991220 | 2994428 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_02936606_02957342 | NA | coding | downstream | 33345 | 2936109 ~ 2957875 (-) |
| CI01000016_02884294_02912568 | MAP7D1A | coding | downstream | 78652 | 2882846 ~ 2912568 (-) |
| CI01000016_02817855_02829699 | NA | coding | downstream | 160763 | 2817855 ~ 2830457 (-) |
| CI01000016_02802780_02815803 | NA | coding | downstream | 175417 | 2802599 ~ 2815803 (-) |
| CI01000016_02679833_02695963 | SH3BP5B, SH3BP5 | coding | downstream | 295257 | 2678538 ~ 2695963 (-) |
| CI01000016_03060171_03060612 | RAB42B | coding | upstream | 65115 | 3059543 ~ 3060612 (-) |
| CI01000016_03062846_03063013 | NA | coding | upstream | 68418 | 3062846 ~ 3063272 (-) |
| CI01000016_03064633_03068201 | NA | coding | upstream | 70134 | 3064562 ~ 3069092 (-) |
| CI01000016_03072793_03080040 | NA | coding | upstream | 78300 | 3072728 ~ 3080040 (-) |
| CI01000016_03082653_03084658 | NA | coding | upstream | 87958 | 3082386 ~ 3084658 (-) |
| G95172 | NA | non-coding | downstream | 113481 | 2877531 ~ 2877739 (-) |
| G95166 | NA | non-coding | downstream | 126089 | 2864769 ~ 2865131 (-) |
| G95161 | NA | non-coding | downstream | 142317 | 2848679 ~ 2848903 (-) |
| G95158 | NA | non-coding | downstream | 151526 | 2839470 ~ 2839694 (-) |
| G95157 | NA | non-coding | downstream | 152700 | 2838255 ~ 2838520 (-) |
| G95181 | NA | non-coding | upstream | 24366 | 3018794 ~ 3019070 (-) |
| G95199 | NA | non-coding | upstream | 49239 | 3043667 ~ 3043866 (-) |
| G95191 | NA | non-coding | upstream | 55463 | 3049891 ~ 3050726 (-) |
| G95203 | NA | non-coding | upstream | 96937 | 3091365 ~ 3091751 (-) |
| G95210 | NA | non-coding | upstream | 111332 | 3105760 ~ 3106448 (-) |
| G95070 | NA | other | downstream | 5579 | 2985260 ~ 2985641 (-) |
| G94786 | NA | other | downstream | 714945 | 2270836 ~ 2276275 (-) |
| CI01000016_03647744_03675574 | NA | other | upstream | 641179 | 3647653 ~ 3675585 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 871333 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 1918280 | 4918975 ~ 4922518 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 2331091 | 5325519 ~ 5332874 (-) |
| CI01000016_05412782_05415867 | NA | other | upstream | 2417831 | 5412248 ~ 5415906 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
