CI01000016_03322103_03326683


Basic Information

Item Value
gene id CI01000016_03322103_03326683
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3322003 ~ 3330762 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03322103_03326683.mRNA
ATGATGAAATGCCTCACTAAAGTTCACATTCATTTGTAGATAATGATGCTTGGCTGCAGTTTTAAGTAAAAGGCGGGCCAGACATTATTCACCAAGAATTACTCTGTCAGGCTCTATGACAGAGAAATAAAAGAAATATCATCAGTCCCACCTGTATTGATGACCTTCTGTCACTGTGTTGCATATAGACAGTTTCAATTGCACTGAACACAATGAAATGAGGTAATATTGCTGGACATTGATCATATGTGCATTTGACTCTATTCTAAATTCATGAATGCTTGCTAGAGTGCAAGATGAATAATTTTCAGAGAGAAAATTGTAAAAGCCAACCCATCAAAAGTTTTTCTATTTTCTCAAAGTTTTGCCTTTAATGACAGGTGGAAACTTTCTGAAGTTCTGCCCATGCTAAAGGAGATTTCTGTTTATATAGATCTCTCCTATCCAGACATATTTCTTTATAATAAAGCATATGAATAACATTTTGTAACATTTAACTATTCGCAAGCTATTTCACATTGGTGCATTTATTAATTTAGCAGATGCTTTTATCCGAAGAGAATTACAAATGAGCAAAAGCAAGTAAACCAAAGGAGACACTAACAATAGGGTGATTCAGATTTCCATTTTAGCCAGAAAAATATGAGCTAGTACAGAGGTCAACAAAGCAAAAATAAAACAGAAGAGAGTAGATGTCATAATGGGCTTTGTACAAGGAGAATATTAAGTGCATGAATGGTTTTTTGATCAAGTGCCTGCAGAGGATTTTTTAGATCATATTATGTGCAGTCATAATCATCAGGGACAAATAAGAGTTGGTAAACAAGCTCAACTTTTTGTTGATCAATAAATAATTATTTTGGTAATCATTCATTCACATCCGGTTGGAAAACCAGCATATTGTTTTAGTAGTTGGTAAAACATTCAATGAATATGACATTTAAAAACATATACACTATAGTACAGGTCAGACACATGGATTGTCTTAAGAATGGATTGCTGAATCTCCTGTCTGCACAACAAATTTACCTTTGGGTACTAATAAAGATACCTTGACCTTGACCTTTAAAACTTAAAGGGGACCTATTATGCCCCTTTTTACAAGATGTAATAAAAGTCTCTGGTGACCCCAGAATGTGTCTGTGAAGTTTCAGCTCAAAATTTCCCACAGATCATTTATTATAGCATGTCCTATTTTCACCTATTTAGCCTTTACAGCTTGTCCTTTATATACTATGTTAACAACAAAACTGGAGAATCTCACGCAGCCAAAATGTCAGAAATTGTCAGTAGCGGTGTTCGGCCTGATATGCTTGAACCAGAGTCGAACACAGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGAATGCAACAGGACATTTCTAAATGGTTGGTGGATAAATTTATGTAGCTGTTGTGGAGTTAACTTTATTCAACTTATCGATTAGAGAATATATGCTGCATGGAGATAGAAAAGGCATAGTTTTGTTTAATTATGGTTATAATTTATATATTCATCTTTAGCCACATTAGCCACACAAAATGCTAACAAGCACATTCAAAATCACGATTTGGAAACATTCACAAAATATTGTTCTGATATAAAGTTTGAGCACAAACAGTTGGTATCGACCCCTTTTGTGCAAATACAGCGTTGAACTGACCCTTGTTTGCGAAGCAGTGCAGTGTAAAATGATTTGCGCAAACATATGAGACTTTACCTAATTTCCTAGGCCCATTTCCTTCATAAATGAAATTCATCGACCGTGTCCTCAGTGGCTCAGTTGCTGGAAGTCTACGGAGACGCTCATGTTCATTGGTACATCCAAAAACAGAACATTTGTAATGTGGACACACATCAGTGTTCAAACACCATGTAAAAGTGTTTGCATAATAGGTCCCCTTTAAGTCACAAATTTTTACCAAGGTATATATAGTAATAAAGTAATATAGTAAAAGTAGTAATATTGTTAAATATTATTACTATTTAAAATAATGTTTCTATCTTAACGTATTTTACTTTTTCCTGTGACAGTAAAGCTCTATTTTTACCGGCAATTACTCCAGTTTTCAGTTTCGAATGTTTCATTCTGTCAGAAATCATTGATTTCTGACAGAAAATCATCAGCTGATTTTTTTTAATTATTATTATTAGTTGAAGGGGGAAAAATTATACACACACACATTTTACACACACACACACACACACACACACACACATTATATATATATATATTATATATATATATATACAGACGTGGACAAAATTGTTGGCACCCTTGATAAATATGATCAAAGATGATTGTAACAAATAAATCTGCATTGTTTATCCTTTTGATCTTTAATTCATAAAATTAGCAAAAATCTAACCTTTCATTGAAGGAAAAGAATTGAAAGTGGGGGGAAAATCACATTATGAAATAAATGTTTTTCTCCAAAACACGTTGGCCACAATTATTGGCACCCTTTTATTCAATACTTTTTGCAACCTCCTTTTGCCAAGATAACAGCTCTGAGTCTTCACCTATAATGCCTGATGAGTTTGGACAACACCTGACAAGAGATCAGAGACCATTCCTTCATGCAGAATCTCTCCAGATCCTTCAGATTCCCAGCTCCATGTTAGTGCTTCTTCTCTTCAGTTCACTCCACTCATTTTTTTTAGGGTTCAGGTCAGGGGACTGGGACGGCCATGTCAAAAGCTTCATTTTGTGCTCAGTGACACATTTTTGTGTTGGTTTTGATGTTTGTTTTAGATCATTGTCCTGATGGAAGATCCAACCACTGCCCATTATTGGATTTCTAGCAGAAGTGGTCAGGTTTTGATTTTTTATCTGTTGGTATTTGATAGAATCCATGATGCCATGTGTCTGATCAAGATGTCCAGGACCTCCAGCAGAAAAATAGGTCCACAACATTAAAGATCCAGCAGTATATTTAACCGTGGGCATGGGATACTTTTTATCCATGTGTGCACCAAACCCATCTGGTGGGTTTGCTGCCAAAAAGCTCTTTTTTTTTTGTTTCATCTGACCATAGAAGTCCCGTTTGAAGTTCCAGTCTTGTCTAACAGCTGAATATGCTGGAGATTGTTTCTGGATGAGAGCAGAGGATTTTTCTTGAAACCCTCCCAGACAACTTGTGGGGATGTAGGTGCTGTTTGATCATTTTTTTTAGGCTTTCTGAGACTCAAGACTCAACTAATCTCTGCAATTCTCCAGCTGTGATCTTTGGAAAGTCTTTGTCCACTCAAACTTTCCTCCTCACCGCCCATTAGGACGATTTAGACACACGTCCTCTTCCAGGCAGATTTGTAACATCTTTAGTTGACTGGAACTTCTTAATTATTGCCCTGATAGTGGAAATGGGGATTTTCAATGCTTTAGCTATTTTCTTACAGCCACTTTCTATTTTGTGAAGCTCAACAATCTTTTGCTGCACATCAGAACTATATTCTTTGGTTTTACTCATTGTGATGAATGATTAAGGGAATTTGGCCTTTGTGTTTACACATATTTGTACTCCTGTGGAACAGGAAGTCATGGCTGGACAATTTCATGCTCCTAGTCACCCTGGTGTGATAAAAAAAAAATGTAAATATGAATGGGAATATACTTCAGAGATATTTTACTCATAAAAAATTCTAGGGGTGCCAATAATTGTGGCCACTGTGTATTGGAGGAAAACATTTATTTCATAATGTGATTTTCCCCCCACTTTCAATTCTTTTCCTTCAATGAAAGGTTAGATTTTTGCTAATTTTATGAATTAAAGATCAAAAGGATAAACAATGCAGATTTATTTTTACAGTCATCTTTGATCATTTTTATCAAGGGTACCAACAATTTTGTCCACGTCTGTATATATAAATGCATCAGCCATTCTTTCCTGAAAAAAAAAATCTGCTTTTTTTGCATTAACAGCAAAAGCCTCACTCGATAAACAGAGCAGTGTATCTCACACAGATAAGCTGAGGACAAACAGATGGTGCGGACCCGTGCCTCATACAGCGAGCCATCGCTCTGTAACAGGTTGTGGAGATTCACGGGGTGGAGGGAAGATAAAGAAATGGAGGAATGGAACTCATCCATGTGTCCACTGCACCTGGCTATCTGCCTCCAAGCTATGTGTACTCTATCCTAAGCGCTGAGCTGGAACAACAGGCCGCTCTACCACCTCCAGGGAGCCCTGCACGTCCATCTGTGCTACAGGTTGCAATTGGCTGCATGGGATTCAGCTTCTTCCCATTTAACACCGGCTCGCTTCAAGTCCTCTTTGAATGCACTCTACCAGGTCTTCTTCAGCCTTCCTTGCTTGCAATTTTTGCTTGGAGAAAGCCTGCGGTCTGCAGCCACCTCACATCCACAGCAGGAAATAGGGGGAATACAAAAAAGGAGGAAGTGAGAGAGGTAGAGATGGGCGCAGGAGAGACTGAGTACAAAAATAGACATTACAGAGATGGAAAGACAGTGATAAGAACCACCGAATGGAGGAAAGGATGGAAAGGCAGACAGATGTGGTCTAAAAGGGGATGTGCCCAAGAACAATCACAGCTCTCACTTCTCTCCCAGACTGCAAGATTACTTATTAATTATGGACTGCCTGAGTGCCTAGTAATGGGTTTTCAACAATTGCACTGTGTACCCTGTTGCAAATGCCATGACTTCTCATAAACACTAGATTTACAATAAGCAAGGGATAAGATACAGCCGGCCAGTCATTATCACAAAATAAACCCCGAAAGAATGACCAAACAAATCAGTGAACATTAAA
>TU108429
AGAGAATCTAATGAATCAGCAGAGGCTGCGAGTCCATCCCAGAAGAGCAGATCTGGCTGACAAAGCACAAGGATATGAAATGTCAGTCAGGTCACAGTCTTTATGTTCAAGTTCCATTTAGGATGTGCCCAAGAACAATCACAGCTCTCACTTCTCTCCCAGACTGCAAGATTACTTATTAATTATGGACTGCCTGAGTGCCTAGTAATGGGTTTTCAACAATTGCACTGTGTACCCTGTTGCAAATGCCATGACTTCTCATAAACACTAGATTTACAATAAGCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03322103_03326683.mRNA False 4776 mRNA 0.37 4 3322003 3330762
TU108429 True 287 lncRNA 0.42 1 3322080 3322366

Neighbor

gene id symbol gene type direction distance location
CI01000016_03082653_03084658 NA coding downstream 237345 3082386 ~ 3084658 (-)
CI01000016_03072793_03080040 NA coding downstream 241963 3072728 ~ 3080040 (-)
CI01000016_03064633_03068201 NA coding downstream 252911 3064562 ~ 3069092 (-)
CI01000016_03062846_03063013 NA coding downstream 258731 3062846 ~ 3063272 (-)
CI01000016_03060171_03060612 RAB42B coding downstream 261391 3059543 ~ 3060612 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding upstream 224538 3555300 ~ 3559186 (-)
CI01000016_03647744_03675574 NA coding upstream 316891 3647653 ~ 3675585 (-)
CI01000016_03719404_03722988 NA coding upstream 388405 3719167 ~ 3723058 (-)
CI01000016_03834829_03843163 ZNF687 coding upstream 503738 3834500 ~ 3843266 (-)
CI01000016_03881771_03883341 NA coding upstream 549731 3880493 ~ 3883466 (-)
G95210 NA non-coding downstream 215555 3105760 ~ 3106448 (-)
G95203 NA non-coding downstream 230252 3091365 ~ 3091751 (-)
G95191 NA non-coding downstream 271277 3049891 ~ 3050726 (-)
G95199 NA non-coding downstream 278137 3043667 ~ 3043866 (-)
G95181 NA non-coding downstream 302933 3018794 ~ 3019070 (-)
G95376 NA non-coding upstream 67420 3398182 ~ 3404860 (-)
G95380 NA non-coding upstream 75670 3406432 ~ 3406702 (-)
G95387 NA non-coding upstream 80477 3411239 ~ 3411521 (-)
G96569 NA non-coding upstream 105448 3436210 ~ 3437197 (-)
G96592 NA non-coding upstream 180541 3511303 ~ 3511652 (-)
G95070 NA other downstream 336362 2985260 ~ 2985641 (-)
G94786 NA other downstream 1045728 2270836 ~ 2276275 (-)
CI01000016_03921124_03930996 NA other upstream 534999 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 1581946 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1994757 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 2081497 5412248 ~ 5415906 (-)
G95313 NA non-coding upstream 2001 3324367 ~ 3324682 (-)
G95315 NA non-coding upstream 3546 3325912 ~ 3326175 (-)

Expression


Co-expression Network