CI01000016_03834829_03843163 (ZNF687)


Basic Information

Item Value
gene id CI01000016_03834829_03843163
gene name ZNF687
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3834500 ~ 3843266 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_03834829_03843163.mRNA
AATTTACATTTAATATTTTTCCACGTGTTGATGCATTTGAGCACATAACAGTTTTTTACAATATGAACAACTGTTCAAATCTATGCTAATGGGATGTCATGTAATGCAGGTATTTGTCATCTACATGGGAATGGGGGACATGAAGACACCAGATTTCGATGACCTGCTGGCAGCGTTTGACATTCCAGATATTGATGCCAAAGAAGCAATTCAGTCTGACACCGATGGTAATCATAATGAACGCAGTGGTGTTGCTGGAAAGGAGAGAAGTGGAAGTCCATGCCTAAGACCCCCAGAAAGCCCTGAGTCTGTTCCTTTAGCTCCTCACAGCGACCCTCCTGTGGTCAGTGTGATTGTAAAAAACAGTGTACATTCTGATGACAAAACTGAAGAGGATGTAACTGGAGACTTTCCTGGTGCTGATGCATCACATGAGTCTCCAGGTTCCAGAGAAGATGACCTAATGCCTCCAGATCCATTCATCTATAATGGACTCAAAACTGTCTCAGATGGGGCTACACAACCCTCTCCATCACCAGCTCTGACCCAGATGCAGCCAAATGGGCCACTTTGGTCTCTCTCTTCCTCTAGAGTGTCTGATGACAACCAGGATGGCATTTCTTCTAAACGTCCTGCATCCAGCACTTTCTCCCCACCTCAGTCCTTACCCCTGACTGATCCCCCCATCTTATCCTCACATTTAATTAGTTCTAACTTTCCCCCCAGAGTTGATTGTGAGGAAGCTCAACCATTAAATGGCACTTTGAGGGCAGGAGTCCGCCGCCGTTTATCCGAAGATGAAGAATCTGAACCAGACCTCGGTAGCCCTGCACTTGTCATACAGGAGAGCCCAGATTCCCAGCTGTGCTCTGCTCCCAAGGTACCACGATTACAACGGTCCCCTTCAAGTGTGTTTCAGCTGCCCTCTCCCTCGTCCCCTTCCTTACCAGTGAGTAACACTCAAATTGAGGAGCCCCCAAAACTTCTACAAAGCAGCGTCAACCCAACATCAGTGACCTCCAAAAATGATTTGCCAGCTAAAGAAAAAGACATTGAGCACATAATAGAGGAGAGAGATTCTCCAGAGAGCCCTGAGCCAGAAATCCCTCAACCTCATACTTCTCTACCCTCAAATCAGCTCGGAGCCAATGAGTCAGAACAGAAGGAGAGAAGAGAAGAAGCCCCTCAAGATCAAGTTATTGACATGAGTGTAAGTGTGCAGGAGAAGAGCAGTGTTCAGAAAAAAAAAGATTATGATGGAGCTGAGGAGACCGAAGAGAAATCTACAGTGCCTAGTTTGGTAGATTCGGTCTCTGAAGATGTCACAAACTCCAGCAAGACCTCCGCCAAGCCTCTCAAAGTGAGAATCAAGACTGTCAAAACATCTGCCGGAAACATCACACGTACTGTATCTAAAGTGGCTCCCAAAGGAGGGGCCTCCAAGGGTCCAGGCGGCTCCAAAGTTCAAGCAGGGGCCCGTAAGTCAGTCCACAGGATTCAGAGATCTGGCGCTGCTTCTCAAGGACCACCTCAGGTGACGATGTTGCCCGTGTCCACCCTTCAGGATGCCAGCACAGCTATGTTATTTGCAGCCAGCAGGGCACAGAATCAAATAGCCACCACTCTCTCTGCCACTGCTGTCAACATCACCAGAACGTCAACCCTGCCATCCATCTCCTCTCTGGGGCAGAAAACGATGAATGGGAACCCTGGGACAGCCAAACCAGCCTCCATTGTGAACAGCCCAGGAGCTGTGATCTCACGCAGCCAGTCTAGCCTCGTGGAGGCCTTCAACAAAATCCTCAACAGTAAAAATCCACTGCCAAGTTATCAGCCGGACCTCTCCACCATGCCTCCCCCTGAATGGGGTCTTCGATTGCCCTCAACGGGATATCGTTGCCTTGAGTGTGGGGATGCGTTTGCCCTGGAGCGCAGCCTGGCAAGGCACTATGATCGCCGCTCTATGAGAATCGAGGTGACCTGTAACCACTGCTCCAAACGCCTGGCCTTCTTCAATAAGTGCAGCCTGCTGCTCCATGCACGAGAACACAAGGAGAAGGGGCTGGTTATGCAGTGTTCACACCTCGTCATGAGTCCGGTCAGTGTGGAGCAGATGATTGGCCAGCAGGATACCGTGCCTATAGGGATGCTCTCTCCTGCTCTGCCTGCCCTTAAAGAAAGTGGTGGCCAACTGACTCAATCTTCTGATAACAGCTGTCCAGAGTGTTGGAGTCCATTCAAAGGGAAGGCAGAAATAGCAGCACACTTTCAAGAGGTGGATCCTGGTGTCACTGACATGCTTCATGACCTCAACACTCACCTGAATCAAACCTGCCTGCATTACTCACGTCGCCTTGGATATAGGTATCTGCACATAGTAGTACTATATACTAGTAAATCCTTGGTTTTATCCATTGGTTTTGTGAAGGAGCTATTTCCTCTTTTCTACAGATGTGCCTGTTGTCATTTGGTGTTTGGAGGAGTGAATAGTCTGAACGCTGTGAAGACTCACATGCAGACGTCTCACTGTGAGGTCTTCCATAAATGCCCCTCCTGCCCCATGGCTTTCAAATCACCCTCTGGTGCTGAAGCCCACTGCACCTCCCAGCATCCTGAACTCCCTGAAACGGCAAGACAGTCTAAGGAGATCTATAAATGCGTGTTGTGTCGGACTGTTTTTACCCAGAAGGCATTGCTCAATGTCCATTTCGACACTCACTTAGCTAAGCAGAAGATGCACGTGTTTAAATGCCCTGACTGTAACAAGCTCTTCACGCAGAGAGGTTCCCTCCTTGAGCATGTTAAGGACTCTCACAGGGACATTTATGACACTTTGGCACAGAACAACTTGGTAAAGATGGATAGCTCTGATGGGGAGGAGTGGGGACGAAATGAAGACAAAGGAAGAGTGGCAAGAGAGGATGGGAACTCGCATATCCAGATCTGGAGCTGCTCACAGTGCCAGACGCGCTACAAAGAGAAAGAGAGCTACATCACCCATATGTCCGAGCAGCATGGCAAGGAACTGAAGAAGTTTCCATGCACTCTTTGTGAAGGCTCCTTCTCTTCATCCTCAAGTTTAAGACGGCACATTCGTGTGAAACACAAAGGCATCAAAAGAGCTTTTTATTGCCAACTTTGTACAGGTGGGAAGAGGAGTTTCAGCAGTAAGCTGATTCTTGAGAAACATATTGAGGCTCAACATGGAGGTGACAAACGAGCAGCCAAACAGGCAGTTCCTCAAATCACAGATGCAGCTGACAGCTCATCTGAGCATGATGGTGCTACTTTGGGCGGGGCCTCAGTTGAAGCAGAAAGCCAATTGGCTGAGAGCAGCCTGACCAGACATGGTAAAAGAGCTGCAGCTGAGGAGCAAGAAGCCACAGGATTTCGCTGCATGCCGTGTGGTTTTACCACAGAGGACAGGGAGGAATTTCTCCAGCATATTGTTTGTCACCGTGACGGGGGCAGCACCTTTCAGTGTCAGCAGTGCGGGGCATGTTTCGCATCCGCCTCCTCCCTCAGCAGGCATCTCTTCATTAGCCATCGCGTGCGTGATTCCCCCTCCGATCACCCCGAGGCATCTCCTGTCACTGGTTTAACTTCTGGACATGTGACCTCTGACTCTGCAGTTGCAGCATGGTCCCCGGGGTCACCATCGAGTGTAGGGGGGACACAGGTAGAGGATGGGGAAGGTAAGCACACCTGTAAGGTGTGTGGACGTTACTTTAGCAAACCTGCTGATCTTAATACACACTTCAGAACTCATGGCATGGCCTTTATCACCGCATACAAAACAGACAAACCAGCGTAGAGAGTCAGGAAAGAATTAACATGAGAGTGAAACTGATGAAACCTGGCAGGTACATGTCTGGGAACATATGCCACCCCAAAATCAAAAACAAAAAATAAGAAATTATATTTTACTTGAAGAAAATGAAGCCTAATTTTAGGACTGTTTTTAATTTTAAGATTTTTTTTTTTCATTATATTTAATTTATTTTGTGACTTTTTTTTATTAAGCACACCAATTCTAATTACTGTAATAAAGTTAAAAAAAAAAAAAAAGATATATTTCATTTCAAATTTTTTCAATTTATTTATATAATGTATTCCCCTTTATTTATGCTGATTTAAATTAAA

Function

symbol description
znf687 Predicted to enable DNA binding activity and metal ion binding activity. Located in cytosol and nucleoplasm. Implicated in Paget's disease of bone.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_03834829_03843163.mRNA True 4143 mRNA 0.47 9 3834500 3843266

Neighbor

gene id symbol gene type direction distance location
CI01000016_03719404_03722988 NA coding downstream 111442 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 158915 3647653 ~ 3675585 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding downstream 275314 3555300 ~ 3559186 (-)
CI01000016_03322103_03326683 NA coding downstream 503738 3322003 ~ 3330762 (-)
CI01000016_03082653_03084658 NA coding downstream 749842 3082386 ~ 3084658 (-)
CI01000016_03881771_03883341 NA coding upstream 37227 3880493 ~ 3883466 (-)
CI01000016_03921124_03930996 NA coding upstream 76789 3920055 ~ 3931162 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 200749 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 241458 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 337997 4181263 ~ 4188590 (-)
G96629 NA non-coding downstream 1938 3831525 ~ 3832562 (-)
G96675 NA non-coding downstream 13872 3819667 ~ 3820628 (-)
G96672 NA non-coding downstream 23001 3809510 ~ 3811499 (-)
G96626 NA non-coding downstream 33532 3734525 ~ 3800968 (-)
G96612 NA non-coding downstream 42697 3787406 ~ 3791803 (-)
G96687 NA non-coding upstream 18803 3862069 ~ 3887758 (-)
G96686 NA non-coding upstream 19899 3863165 ~ 3902758 (-)
G96688 NA non-coding upstream 21234 3864500 ~ 3864945 (-)
G96695 NA non-coding upstream 52769 3896035 ~ 3952982 (-)
G95070 NA other downstream 848859 2985260 ~ 2985641 (-)
G94786 NA other downstream 1558225 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 1069442 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1482253 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1568993 5412248 ~ 5415906 (-)
G97341 NA other upstream 2315720 6158986 ~ 6159721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009867 znf687a coding NC_007127.7 CM002900.2 21917673 ~ 21938044 (+)