CI01000016_04044171_04047247 (TRIM108)


Basic Information

Item Value
gene id CI01000016_04044171_04047247
gene name TRIM108
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4044015 ~ 4047305 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04044171_04047247.mRNA
GGATCCAGTGACTCTCTCTTGTGAACACTCGTTTTGTCGGGAATGCATCACAGGTCACATGCAGGCCAGCCTTGGACCCAGCGCCTGCCCAGAATGCCAAAGGCCTTATAACAAAGAAGACCTGAAATCCAGCCGTTTACTGAGGAACATGACCTCGACAGTGAGAGAGCACCTTGCTGAGCAGAAATCAGACAGATCCACATCTAAAGAAGGAACGCAAGCATTAAATTCTCCAGAAATGGAAAAGATGCTGATGTGTTCTGAACACGATGAGAAGCTTAAACTGTTCTGTGAGACTGATCAGAAGCTGGTGTGTGTCATCTGCAGGGATGGAGACAAACACAAAGGCCACGTCTTTAAACCTGTGAAAGAAGCTGCACAGATCAACAAGGGGGAGATGAAGACTGCTTTGGGTTTTCTTGCCAAAGAAAATGGACAGCTGGATTACATGATACAACAACAGACAACTGAGATCACTAAATCTGAGGATAAATCCAAAACCTTATCAGCCCAGATCTCTGCTCAGTTTGAAGAAATGCACCAGTTTTTACAACAAAAAGAGGATGAGGTGAAGAAACAGTTGGAGAAGGAGGAGAAGAAAGTTATAGAAGTCATGCAGAAGAATCAGTCTTTGATAAACAGAAGGTTTTTGGAGAACAAAGAAAAGGAGATTATTCTGCAGTCAGCTCTGGAGATCGAGCAACCTGATCACTTTCTACAGTGGTGGAATGAAAAAGGATTTCCAATGACAAAGAACATGAAGCAGAAAGCCATTGAGACACCATCAAATACCCAGTATATGTCAAGGGTCAAAGATCTTACTGTGCTTCCTGATTCTCTCTTTCTTGGCCCCCATGAAACCCACCTGCAGTTCTTTGTGTGGAAGGAGATGCTGCAATCCATCAAACCAGTTCCTGAGAGTTTAACCCTGAAAAATCCTGGAGAATCATACTTAAAAGTGTCTCCAGGGGGCGCCAGAGTCCGACAAGCTGACAGAATGTCTGCTCTGTATAAAGACTTCAATCCAGGTACAGTTTCAGTGGAAAACTTCCAAACTGGCCAGCACTACTGGGAAATAGAGGTCGATAAAAAGCCAGACTGGACTGTGGGAATTAAGATGGGTTCAGAAAAACAGACAACAAAGTCAGCTGAGAGTGAGATCCTGCTCCAACTTAAACACAATAAAGGATACGTTCTGTCCAGTGATGGAAAGGACACTCCATTAAATACTCGAGACAAACCACAGAAAATAGGATTGTATCTGGACTGTGAAAGAAAGCAGGTGTCGTTCTATAACGCTGACAACATGTCTCGGATGGCCCAGATAAACTACAGCTCAAAACAGCCTTGCTGTCTCAGTCTGGTGCCAGGACTTTATCTGGATGGAACGAATAGTGACCCTCTCACTATCTGCTCATATGAGTTTAACTCAAAGAGGAGATTAAAATAAAAATGTTTTGATCTTTCCAACTTTATTTGGTACATGACACATCATGATGGCAGGAAATTTAAATTTAGCTTCTTGAAGTTTTTGTGTTATTTGCTCACTGCAACAATGACAACATGGACAGGAACAAGAGAAATATTGATTATTTCTTCAAATTAA

Function

symbol description
trim108 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm.

NR:

description
Si:ch211-154o6.7 protein, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04044171_04047247.mRNA True 1606 mRNA 0.42 6 4044015 4047305

Neighbor

gene id symbol gene type direction distance location
CI01000016_03921124_03930996 NA coding downstream 112853 3920055 ~ 3931162 (-)
CI01000016_03881771_03883341 NA coding downstream 160549 3880493 ~ 3883466 (-)
CI01000016_03834829_03843163 ZNF687 coding downstream 200749 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 320957 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 368430 3647653 ~ 3675585 (-)
CI01000016_04084854_04101874 PIANP coding upstream 37419 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 133958 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 179134 4226439 ~ 4232287 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 216624 4263929 ~ 4272171 (-)
CI01000016_04277441_04297655 NA coding upstream 229653 4276958 ~ 4298217 (-)
G96736 NA non-coding downstream 51192 3992611 ~ 3992823 (-)
G96724 NA non-coding downstream 55201 3986802 ~ 3988814 (-)
G96723 NA non-coding downstream 60011 3980704 ~ 3984004 (-)
G96729 NA non-coding downstream 69967 3973807 ~ 3974048 (-)
G96728 NA non-coding downstream 72171 3969511 ~ 3971844 (-)
G96788 NA non-coding upstream 18230 4065535 ~ 4065881 (-)
G96789 NA non-coding upstream 21048 4068353 ~ 4068554 (-)
G96793 NA non-coding upstream 70992 4118297 ~ 4120351 (-)
G96792 NA non-coding upstream 73211 4120516 ~ 4122375 (-)
G96810 NA non-coding upstream 135196 4182501 ~ 4182967 (-)
G95070 NA other downstream 1058374 2985260 ~ 2985641 (-)
G94786 NA other downstream 1767740 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 865403 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1278214 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1364954 5412248 ~ 5415906 (-)
G97341 NA other upstream 2111681 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4841528 8888833 ~ 8894737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1405400 LOC106566443 non-coding NC_048580.1 CM023234.2 69675532 ~ 69679622 (-)