CI01000016_04181435_04188590 (FLOT1B, FLOT1, FLOT1A)


Basic Information

Item Value
gene id CI01000016_04181435_04188590
gene name FLOT1B, FLOT1, FLOT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4181263 ~ 4188590 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04181435_04188590.mRNA
ATGGACATGCCTCCCACACCTAGACAGTGGATTTTCAAAAGATGTGGTCGCTCTCCTCCTCTGATGATTGCTGGTGGAAGAGTGTTTGTTATTCCCTGCATTCAGCAAATCCAGCGGATCTCTCTCAATACTCTGACTCTGAATGTAAAGAGTGAAAAGGTCTACACCAGGCATGGAGTACCAATCTCAGTGACTGGCATTGCCCAGGTGAAGATCCAGGGTCAGAATAAAGAAATGCTGGCTGCCGCCTGTCAGATGTTCATGGGGAAGTCTGAGACTGAGATTGCTGAGATTGCCCTGGAGACTCTTGAGGGACATCAGAGAGCCATTATCGCCCACCTGACTGTGGAGGAGATCTATCAGGACCGTAAAAAGTTCTCAGAGCAGGTGTTTAAAGTGGCTTCCTCTGACCTGGTCAACATGGGCATCGGTGTTGTCAGCTACACGCTCAAAGATGTGCATGACGATCAGGATTATCTAAGCTCGCTGGGTAAAGCTCGTACTGCTCAGGTGCAAAAAGACGCTCGTATCGGTGAAGCTCAGTTCAAGAGAGATGCCGTCATCAAGGAGGCTCACGCCATGCAGGAGAAGGTCTCTGCTCAGTATATGAATGAAATTCAGATGGCTAAAGCACAAAGGGACTATGAGCTGAAGAAAGCATCCTATGACTATGAGGTCAACACCAAGAAGGCAGAGTCTGAAATGGCCTATCAGCTTCAGGTGGCCAAGACAAAGCAGCGTATCGAGGAAGAGAAGATGCAGGTTCAGGTTGTGGAGCGTACGCAGCAGATCACTTTACAGGAGCAGGAGATCACCCGTAGGGAGAAGGAACTGGAGGCCAAGGTCCGGAAACCAGCTGAGGCTGAGAGATACCGTATTGAGAAGATTGCTGAGGCAGAACGGCTTCAGATGATCATGGAGGCAGAAGCTGAGGCAGAGTCCATCAGAATGAGGGGAGAAGCACAGGCTTTTGCCCTGGAGGCGAAGGGTCGGGCTGAAGCTGAGCAGATGGCCAAAAAGGCAGAAGCTTTTAAAGAGTACAAAGAGGGAGCCATGGTGGACATGCTGCTGGAGAAACTCCCACTGATGGCAGAAGAGATCAGCAGGCCACTCTGTGCAGCTCAGAAGATCACCATGGTGTCCAGCGGTGGGTCAGAAGTGGGCGTTGCTAAGCTGACAGGGGAAGTTCTGGATATCATGACTCGCCTGCCATTCACAGTGGAGAAACTGACTGGAGTGAACATCTCACAGAGCCACACGCCTGTTGATTCTGGTTCAGTTCCTTTCAAAACCAAAGTGCATTCCAGACCAATGCACATAAATTCACCTCAAGTGCATTACTGAAGCCATAGTCCACATGCATGATGCCTTCTGTATCCAGACACTGAAATGTGATGCTTTATTCTGACCATATTTTAAACCTCTTTGTGACTTATGTTCTGAGAATATATCGTCCGATGGTTTGTAAAGACTTTTTCTTTTAAACAGTGGTACTAGAGTTTGCAGACATATTAAA

Function

symbol description
flot1a Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human FLOT1 (flotillin 1).
flot1b Predicted to be involved in several processes, including positive regulation of cell-cell adhesion mediated by cadherin; protein kinase C signaling; and regulation of endocytosis. Predicted to be located in endosome and membrane. Predicted to be part of flotillin complex. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in several structures, including brain; musculature system; paraxial mesoderm; pectoral fin; and pharynx. Orthologous to human FLOT1 (flotillin 1).
flot1 Enables protease binding activity. Involved in several processes, including positive regulation of cell-cell adhesion; positive regulation of cellular component organization; and protein localization to membrane. Located in several cellular components, including basolateral plasma membrane; centriolar satellite; and uropod. Part of flotillin complex. Is active in dopaminergic synapse. Colocalizes with COP9 signalosome and cortical actin cytoskeleton.

GO: NA

KEGG:

id description
K07192 FLOT; flotillin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04181435_04188590.mRNA True 1516 mRNA 0.48 12 4181263 4188590

Neighbor

gene id symbol gene type direction distance location
CI01000016_04084854_04101874 PIANP coding downstream 79310 4084724 ~ 4101953 (-)
CI01000016_04044171_04047247 TRIM108 coding downstream 133958 4044015 ~ 4047305 (-)
CI01000016_03921124_03930996 NA coding downstream 250101 3920055 ~ 3931162 (-)
CI01000016_03881771_03883341 NA coding downstream 297797 3880493 ~ 3883466 (-)
CI01000016_03834829_03843163 ZNF687 coding downstream 337997 3834500 ~ 3843266 (-)
CI01000016_04226585_04232287 NA coding upstream 37849 4226439 ~ 4232287 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 75339 4263929 ~ 4272171 (-)
CI01000016_04277441_04297655 NA coding upstream 88368 4276958 ~ 4298217 (-)
CI01000016_04300720_04301736 NA coding upstream 112059 4300649 ~ 4303507 (-)
CI01000016_04333323_04333836 NA coding upstream 144283 4332873 ~ 4333836 (-)
G96792 NA non-coding downstream 58888 4120516 ~ 4122375 (-)
G96793 NA non-coding downstream 60912 4118297 ~ 4120351 (-)
G96789 NA non-coding downstream 112709 4068353 ~ 4068554 (-)
G96788 NA non-coding downstream 115382 4065535 ~ 4065881 (-)
G96742 NA non-coding downstream 115912 4003345 ~ 4065351 (-)
G96758 NA non-coding upstream 133815 4322405 ~ 4367971 (-)
G96872 NA non-coding upstream 179789 4368379 ~ 4368688 (-)
G96857 NA non-coding upstream 213134 4401724 ~ 4413705 (-)
G96909 NA non-coding upstream 293359 4481949 ~ 4482313 (-)
G96912 NA non-coding upstream 297292 4485882 ~ 4486133 (-)
CI01000016_03647744_03675574 NA other downstream 515950 3647653 ~ 3675585 (-)
G95070 NA other downstream 1195622 2985260 ~ 2985641 (-)
G94786 NA other downstream 1904988 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 724118 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1136929 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1223669 5412248 ~ 5415906 (-)
G97341 NA other upstream 1970396 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4700243 8888833 ~ 8894737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010470 flot1b coding NC_007127.7 CM002900.2 10287588 ~ 10316359 (-)
bowfin (Amia calva) AMCG00006433 NA coding CM030134.1 CM030134.1 4351652 ~ 4360196 (+)