CI01000016_04226585_04232287


Basic Information

Item Value
gene id CI01000016_04226585_04232287
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4226439 ~ 4232287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04226585_04232287.mRNA
GAAAACTGGAATGCACACAAATCACATGAAGGACACAAACAACAACTTTAACAACTCCCTCCTTTGCGCCCAAAAGGAGAAGCTTATTAAGGCGATTAAAAAAATTAAACATGAAATTGATGAATGTTATGAAGCTGAGAAAGACGCCTTTGTGGACGCACTGGAGGTTGAGACCAGATTTGAAGAGATAGAGCATGAAATCCGAGCAGAGTTCCAAAACCTCCATCGATTCTTAGATGAGGAGGAGGAGACGGACCTGGAACGACTGAAGAAGGAAAGGGACAGACGAATAAAGATCTTAAAAGACAGAGAGAAAAAGATTGCCATGCAGGGTAGAGATCTAGAGAGAGCCATCGAGACACTGAATTGCAAACTGCGAGAAGATGACAGTCCCAAACTTCTGAAGGAAATCAAAGAGCTTCTGAAAAGATGTGAGGTGAATTTCATTCGCCCTGCCCCAATAGACACCGAAATCCTCTCTGGTCAGTTTGTGGGACCCATTCAGTACCGGATCTGGAAACACATGAAAACATCCCTCTACCCAAACATATCCACGTTGACTTTTGACCCTGAAACGGCACATCCCCTCTTGACCTTATCTGCTGAGAGGACATCAGTTACTTTCAATGAGGACAATGTGCTGCCTAAGGAGAACCCAGATGAGAGGAACCCGAAGCGTTTCCACTACTACTACTGCGTGATGGGCTCAGAGGGCTTCACTCATGGCCGTCATTACTGGGAGGTGGAGGTGAAGGGCAAGTCCGCCTGGCGAGTGGGTGTGGCCAGAGCGGATGTGCATCGTGGGGAGATGGACTCTTCCTCCACATTAAATGGACTGTGGACGCTGTCCCTGAGAAATGGCTCGATCATGGCCTGCACCCACCCAAAGCCCACACAGGTGCTCTCATACGCCCTCCCCATCCGCATCGGTATCTTCCTGGACTGTGATAATGAGGAGGTGTCTTTCTACAACGCTGTCACCATGACACCACTCTTCTCCTTCTACATGGGGACTGTTCTAGTGCCGCTCTATCCATTCTACAACCCATGTGACGATGATGATGGAAAGAACTGCGCTCCTCTTTCCATCTTCCATCCATCACTCTGAGGGATTGACATAGGAAATAGATGTTTGGTTTTCCCACCTACTGCTGACACAGTTTGAAATACTGAAGCAGCTTGTATACCTATAAAGCTATAGAGCAGTTTTTGCTGTGTAGTTGTGTTTGGATTAACTGTTTAAGTAACAATAAA

Function

NR:

description
tripartite motif containing 69 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04226585_04232287.mRNA True 1254 mRNA 0.47 6 4226439 4232287

Neighbor

gene id symbol gene type direction distance location
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding downstream 37849 4181263 ~ 4188590 (-)
CI01000016_04084854_04101874 PIANP coding downstream 124486 4084724 ~ 4101953 (-)
CI01000016_04044171_04047247 TRIM108 coding downstream 179134 4044015 ~ 4047305 (-)
CI01000016_03921124_03930996 NA coding downstream 295277 3920055 ~ 3931162 (-)
CI01000016_03881771_03883341 NA coding downstream 342973 3880493 ~ 3883466 (-)
CI01000016_04264738_04270463 ABHD16A coding upstream 31642 4263929 ~ 4272171 (-)
CI01000016_04277441_04297655 NA coding upstream 44671 4276958 ~ 4298217 (-)
CI01000016_04300720_04301736 NA coding upstream 68362 4300649 ~ 4303507 (-)
CI01000016_04333323_04333836 NA coding upstream 100586 4332873 ~ 4333836 (-)
CI01000016_04370577_04377413 NA coding upstream 137755 4370042 ~ 4378117 (-)
G96810 NA non-coding downstream 43472 4182501 ~ 4182967 (-)
G96792 NA non-coding downstream 104064 4120516 ~ 4122375 (-)
G96793 NA non-coding downstream 106088 4118297 ~ 4120351 (-)
G96789 NA non-coding downstream 157885 4068353 ~ 4068554 (-)
G96788 NA non-coding downstream 160558 4065535 ~ 4065881 (-)
G96758 NA non-coding upstream 90118 4322405 ~ 4367971 (-)
G96872 NA non-coding upstream 136092 4368379 ~ 4368688 (-)
G96857 NA non-coding upstream 169437 4401724 ~ 4413705 (-)
G96909 NA non-coding upstream 249662 4481949 ~ 4482313 (-)
G96912 NA non-coding upstream 253595 4485882 ~ 4486133 (-)
CI01000016_03647744_03675574 NA other downstream 561126 3647653 ~ 3675585 (-)
G95070 NA other downstream 1240798 2985260 ~ 2985641 (-)
G94786 NA other downstream 1950164 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 680421 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1093232 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1179972 5412248 ~ 5415906 (-)
G97341 NA other upstream 1926699 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4656546 8888833 ~ 8894737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010471 si:ch73-54f23.4 coding NC_007127.7 CM002900.2 10397440 ~ 10404383 (-)
grasscarp (Ctenopharyngodon idella) G385427 NA non-coding CI01000195 null 1196939 ~ 1197214 (+)
mexican tetra (Astyanax mexicanus) G320278 NA non-coding NW_019172885.1 APWO02000026.1 1334670 ~ 1336092 (+)