CI01000016_04936283_04939240 (TLR21)


Basic Information

Item Value
gene id CI01000016_04936283_04939240
gene name TLR21
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4936013 ~ 4939240 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_04936283_04939240.mRNA
ATGGCAGATTCTGCATGTCGTGAACTGATCCTAAAGGCAGTATTTATGTGCCTCCTTAAACTTGCCTTCAGCTACAGTTTCAGGAGTTGCACAGAGGATGCAGATTCTAACCATAAAATCTTCACATGTACTAAATGTCATGAACCAGACATAGCTAAAATTGTGAGTGATGTATTTCCAACAGCAACAAACCTTACAGTTTCTTACAGTAACACTACATATGTTCAAGGCCGAAGCTTCTATCATCTGTCCAATCTGACTTCTCTGGTACTGGACAGTAACTATATTTCTAAAATCCACAAAGATGCTTTTAATAATCTGCAACAACTTCAGACTTTAAATCTGTCCTGCAATAACATATCATTTCTCCACCGTGATGTCTTCAGTGACCTCCATAGCCTCACAGAGCTGATCCTGGAAAGCAACAATCTCAATAATACTGACATGTTCCTGTTTTCCAAATTGACAAACCTAACGATTCTCAACCTACGCAGGAATCACCTAAAAAACTTTTCCGCTTTGGTTGAATGCATAACAAACCTGTCTAGCTTGATAAAACTGGACCTTTCCTTTAACAAGTTAACCACACTGAATCACTCCCACCGTCTGCCAGAGTCGCTTGCCAGTCTAAACCTCAGTTATAATAATCTATACAAACTGGGATGTGACAAGTCTTTCCTAATGTATGTGAAAGTGCTAGATTTCTCAGAAAACAAATTGTCATCCAAGACTTTTCAGGGCCTGAATCTGGAGAATATAACATACCTGCGCTTACGCTATACCGGTGTCTCTGCTAACAAGCTTCTTAATTATACCAATGTACGACCGTGGAGCGTCGACTTCTCTGGTTTGAAACTGAAGGACTCTAATGCGCTGTCTTCATTGTGTAATCTTCTGCGACATCACCACCATAAAACACAACACATACATAACATGTACCTCCAGGCCAATTCCATAAAAGCACTAAAACGCAACACATTTGATAATTGCCCAAATATCACAGGTATAATGGACCTCTCACTAAATGATATGAAAACCACTGTCTGTTTACAGTTTCTGCATGGTCAGTACCAACTGGAAAGTCTCAAAATGGAACATAACCATCTGACCAGGCTACTGCCCTGCAACAAAACAGACAAGCTCTACAGCCTGAGAAGCCTGAGCTATCGATACAATCGTATTCTACAGGTCGGAGGTTTTGCCTTCAGTAATACACCAAACTTAACAAACCTCGAGCTAAACATAAACATAATTGCTTATATGCACCATAAAGCCTTACATGGACTCAAAGATCTTGTTACACTTCGTCTCGACAACAACCTTTTGACCGATGTCTACAATGACAGCTTTGAAGATCTTACCAGCCTGAAGACTCTCAACCTGCGCAACAACCAAATATCTGTAATTTTCAACTATACCTTTCATTCTCTGTCAAATCTAACTATTTTAGATTTAGGCGGGAACAAGATCACACAGCTGAAGCCACATGCATTTGATGGGCTGCATAGCTTGGCCAATTTGTATTTAGATAGAAATCGTCTGAAAGAGATCGACAGCGGACTCTTTGGGAAACTCCATGCTACCCTGAAGGTGCTGGATTTAGAGGCTAACCAAATTGTGTATTTTAGAGAACATAAATTTTCGCCATTTATAAATATGTCGAGGCTTCTCGACCTGAAACTTAGTGCGCAGAAACCAAATGGCATAAACTTGTTGCCGCGTGCGTTTTTCCGGGGACTAACTTCTCTGAAAAGACTTTACCTAACTAACAACCATATCATTGGATTTGGTGCTGAAACATTTGATGACCTGAAAAGCTTGGAGCTCTTAACTCTAGACAACTCATGTGCTGGGATAGCCCAACTCAATCCTGGTATTTTCAAAAACCTTCGAAAATTGAATTTACTATCTGTTGAGAACATGGGCATTCAATCTTTTTCAAAAGAGGTCTTTGGAAATTTGACAGGACTAAAGACACTACATCTGAATCGCAATGCCATGACATCTTTGGACATCAGTTTACTGGACAATCTGACCAATCTGACGTACATTGACATGCGCAGTTGCCCTCTAAGTTGTGGCTGCCAGAATAGTGATCTACAGAACTGGACTCTAACCAATAAAAAACTCCAATTTCCATTTCTTTTCAATATTACATGCCAAGACCATCCAGGGTCATATTTTCACAACTTTGACACTAATGTGTGTTATCTGGACATAGAACTTTACCTCTTTTCCTTAACTTTTACATTCACAATTTTATTAACCTTAATACCATTTCTCTATGTCAGACTTTATTGGAAGTTTAAATACGGCTACTACGTGTTTCGATCGTGGTTTGGAGAACAGTGGCGTCGCTTAAGGGACCAGGAGGAAAAATACAAGTATGATGCCTTTGTTTCCTACAACTCGGCAGATGAAGACTGGGTAATGGAACAGTTGCTACCGAATCTCGAGGGTTCTTCTTTTCGGCTCTGCCTCCACCACAGAGATTTCGAGCTGGGCCGCGATATTGTCGACAACATTGTGGCTGCTGTATATGGAAGTCGCAAAACGATCTGCGTGGTCAGTCAGAGCTTCCTTCGCAGTGAATGGTGCTCACTGGAGATCCAGTTGGCCAGCTATCGTCTCTTTCAAGAAATGCAGGATGTGCTTTTGCTGGTCTTTCTGGAGCCTATACCCAAGCAGCAACTGTCCACTTATCACCGTATGAGAAAGGTCATGCTCAAAAAGACCTATTTGCAGTGGCCTGGGTCAAATTGTTCTGATCCAAGCAGTGCAAAAGAACTGTTCTGGAATCAGTTAAAGAGAGCACTAAGGAGCAGCAACACTGGAAACCAAGAGGAGCAGAAGATGGAGGAGAGTGATCAGAGGAGACAAGAGAAGGACATGAAGGAAAGAGAATATTTTGTGAATCAGACACCAACAGATAAGGAAGAGTATTACCTAATGCCCTGACTACATGTATAAGACCAAATTTACAATATAAGATCAAATTTAATTTAATTTACTTCAGTGAAGGATATAAATTCTATAGCCTGCATATATTACAAACATGTAAAAATAATGATGATAATGGAAAAGATACAGTCACCTGAAGCAATTGTTTATTTTTATAAGGCTTTTGTGGTAAAAATGTAATGAAAATTAAATAAATAAAATAATTAAATAAATAGAAATTCAACAGGTAAAATAACTGTGATCTATTTACTTTACAAGAGTATTAAA

Function

symbol description
tlr21 Predicted to enable signaling receptor activity. Acts upstream of or within antibacterial humoral response and toll-like receptor signaling pathway. Located in endoplasmic reticulum. Is expressed in several structures, including gill; heart; integument; liver; and pleuroperitoneal region.

NR:

description
Toll-like receptor 21

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K18808 TLR13; toll-like receptor 13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_04936283_04939240.mRNA True 3228 mRNA 0.39 1 4936013 4939240

Neighbor

gene id symbol gene type direction distance location
CI01000016_04927541_04930989 PAFAH1B3 coding downstream 5024 4926094 ~ 4930989 (-)
CI01000016_04921091_04922518 NA coding downstream 13495 4918975 ~ 4922518 (-)
CI01000016_04802496_04812976 NA coding downstream 122747 4802454 ~ 4813266 (-)
CI01000016_04696937_04698098 NA coding downstream 237395 4696685 ~ 4698618 (-)
CI01000016_04636548_04646848 ZNF526 coding downstream 289097 4635827 ~ 4646916 (-)
CI01000016_04971399_04981029 NA coding upstream 32102 4971342 ~ 4981400 (-)
CI01000016_04995532_04996727 NA coding upstream 55572 4994812 ~ 4996727 (-)
CI01000016_05011639_05013290 NA coding upstream 70533 5009773 ~ 5013290 (-)
CI01000016_05037135_05040030 NA coding upstream 97895 5037135 ~ 5041364 (-)
CI01000016_05052905_05056425 NA coding upstream 113135 5052375 ~ 5056425 (-)
G97050 NA non-coding downstream 38293 4816630 ~ 4897720 (-)
G97074 NA non-coding downstream 58231 4877344 ~ 4877782 (-)
G97069 NA non-coding downstream 82951 4852100 ~ 4853062 (-)
G96983 NA non-coding downstream 248899 4686861 ~ 4687114 (-)
G96977 NA non-coding downstream 271031 4664759 ~ 4664982 (-)
G97091 NA non-coding upstream 17961 4957201 ~ 4957444 (-)
G97092 NA non-coding upstream 18277 4957517 ~ 4957738 (-)
G97096 NA non-coding upstream 20658 4959898 ~ 4960153 (-)
G97097 NA non-coding upstream 23346 4962586 ~ 4963644 (-)
G97098 NA non-coding upstream 25168 4964408 ~ 4964631 (-)
CI01000016_03921124_03930996 NA other downstream 1004962 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1270700 3647653 ~ 3675585 (-)
G95070 NA other downstream 1950372 2985260 ~ 2985641 (-)
G94786 NA other downstream 2659738 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 386279 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 473019 5412248 ~ 5415906 (-)
G97341 NA other upstream 1219746 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3949593 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3997549 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010485 tlr21 coding NC_007127.7 CM002900.2 11785967 ~ 11789108 (-)