CI01000016_05011639_05013290


Basic Information

Item Value
gene id CI01000016_05011639_05013290
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5009773 ~ 5013290 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05011639_05013290.mRNA
ATGAATGTTGATAAAAAGATGACTTTCATAATGGAAGACTTTAACTTTACTGGTGATTACAATGACAGCTACAGTGGGATTAATGAAGACGACTGCTGTGGACTTGTGTGTGATCAGGAGTCTAGCATGCACTTTGATTCCATTTTCATTCCGGTCCTTTACTCTCTGGCGCTGGTAGTGGGGCTGGTGGGAAATGGGCTGGTTCTGGTGGTTCTGTGGAAGAAAAGGCGGGGCTTGAACGTTACAGACATCTTCATCCTTCATCTGTGCTTAGCAGACACTCTGCTGCTGCTGACGCTGCCCTTCTGGGCTGTAGAGGCAGTGAAGGGGTGGATCTTCGGCACAGCGCTCTGCAAACTGACTGGAGCTCTGTTCAAGATCAATTTCTACTGTGGCATTTTCATGCTTTCCTGCATCAGTCTTGACCGCTACCTGTCCATCGTCCACGCAGTGCAGATGTATTCTCGTAAAAAGCCCATGGTGATTCACTGTTGCTGCCTGATGGTCTGGGTCTTCTGCCTTCTGCTCTCCATTCCTGACTTGAAATTCCTTGTGGCCATCGAGGACAGCAGACGTCAGGATAAAACAGAATGTGTTCCATTTTACCCCTCTGATCCTGAATCTTGGCATCTGGCCACTCGTCTGCTCTACCATATTTTGGGTTTCATTATTCCAGCGATAATGATGCTGTTCTGTTACTCATGCATCCTCCTGCGGCTGAGGCGTGGCTCTCAGGGCATGCAGAAGAAGAGGGCCATCCGTGTCATCGTAGCCCTCGTACTGGCGTTCTTCATCAGCTGGACACCCTACAACATCACCCTCATCGTTGACACCATACAAAGCAACCAGACTATCTATTCCACTAACCAAACATCCTGTGACGGCAACACAGCATTGGATGTAGCTCTTACAGCAACTTCCACATTGGGCTACTTACACTGCTGTGTCAACCCAGTGCTTTACGCTTTCGTGGGGGTGAAATTTCGCAAGCACTTGCTGGACATGCTGAGACCGCTGGGCTTCACGCTGAAGGGCCCTGCAGGCCTGGTGTCACGGAAAAGCTCTGCATGGTCAGAGTCAGTGGACACCTCTCACACATCTGCCTTCTGAAACATCATATGCCATCAAACCAATTTATGTACAGTCAGGAACCATGTCATCTTTTTCTGCAACCTTTAACATCTGTATCCGTATTATGTCAGAAGAGTATGGCTTTAAGTACCCAAGCGTTTCTGTTCACACCAAGGATGGTAACTATAACTAGTTTTAATGATCATTCTGAGAATCGTGAAGTCCAAACCACAACTATAAAGATAACAACACAGAGCAACGATATCACTGGAATCACTTTCAGAATGACTTTCCCAGCTGATTAACGATAAATTCATTAACAGACAATCAGAATCCACCCAACTTCAAAGATGAAGTATGTAAGATACATTCTCTTAACCCAGTTAATGGTTCATTGATTACTATTAGTATGTCATTCAAGGGTTTATCTCCCTCAAAAGTGTAAACATTGAGCCTCTCAGGCACCATTAAAACATTAAGAGCATTCTGCTTAGATCCATCAATCTCTTTCTAGCTCAACTTATAGCTTGAGTTTGGGGCGTAGCTACTATAGCAGGCGGAGCCAAAGGGTGTTTAGCCGGAGTGGATGGGACCATGACTGACGCATTACATGGGAAAAGACATTCAGCTTCGGTTACAGAAGTGCAAGCCAAAATTTGCTGCATTTAGACCTTTAAGTAATAAACAAGTAATGAACACGTCAAAGCGAAAGGGGCATTGCGATGCGAGCTACAACAGATGCTTCAATATCATACAGCATCATCATGTACCCGTTCAGAAAGACAAATGTACATGGCTTCAACAGAAACCTGAGCTTTTAATGGCAGCTGCAGTGACAAAATGACTTTACCAATTGGTGACTGACTTTTTTTATTTAGAAGGCAGGACTTATTCGGCCATATTCCACGTTGGACATTCTCCCCTTCATAAGTAATATCTTTGTATATCTAAAGTGATATGTTGGATGGGTTTATTATAAGTGATGCACTCGGATTTGCTCTACACAAAGTGTTAGCCTCTTCAGTTATTTCCTCATGACACATAGCAACACAGCTTAAAGTATTCCTAATATGTACTTTTATTGAAAATAGCCTTCATTTACCCATTGAGACATGCCTTCACAAGCACCCATAAGAGTTGTGATGTTCGAGTTGGGGCAGGCGCAACTTGCGAAAGGGGCGCTGGCAAGGTTGTTTGAAAATATGCTTTATTTTTGTAATTCCACTAGGTGCCACTAATATCGCACGAACTACATACTTCACCTTTAAAACAACAGATGACAAAACTGCAGCACATCACTTATAATAAAGAGAATATTATCATCCGTTGGTGTGGATTGTAATATTTATCTTTATTCTTATCTTTATAGTTATCGTTCTTGGTGTGAACAGGTCTTTAGTCTCATGACTGTGCTGATTAGCGTGCATGAATATAGAAAAGTCGTTTATCTTACATTCACATATTTCTATTTGCACATGTGGAATACTTTAGGTTATTTTTTGCATTTCTCAAATATACCTGATTGATTACAGCTCACACATTTTGGAGAGAGATAAAACTAGTTTCTATTTTGTCAAAATATAGAAACCATTTAAATCTTTGCAGATTTGTCCAGTGGATCAGACTTTTGAAAAAGTGTGAACAGCTGAATTTTACTGTTATACAAAAGTTCTGGAGTTAATGTATGTAGTGTCTAGAATTGTTCCTAAATGTATTTGTTAATTGTCTTATGTTTTTATTTTTTTTACGATGATGTTTTTAAATATCTCGATTTGCTGTAAATACATTATTAAAACATCTTAAAGACCTACTTGCCATGTAAAGCAAAACTGCAAATGTGTATTTTGGTGCTTACTGTCTTCTTATATTTTGATGTATAACTTTGTTGAACTTTGTATAAATAAA

Function

NR:

description
Cxcr3.1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05011639_05013290.mRNA True 2976 mRNA 0.41 2 5009773 5013290

Neighbor

gene id symbol gene type direction distance location
CI01000016_04995532_04996727 NA coding downstream 13046 4994812 ~ 4996727 (-)
CI01000016_04971399_04981029 NA coding downstream 28373 4971342 ~ 4981400 (-)
CI01000016_04936283_04939240 TLR21 coding downstream 70533 4936013 ~ 4939240 (-)
CI01000016_04927541_04930989 PAFAH1B3 coding downstream 78784 4926094 ~ 4930989 (-)
CI01000016_04921091_04922518 NA coding downstream 87255 4918975 ~ 4922518 (-)
CI01000016_05037135_05040030 NA coding upstream 23845 5037135 ~ 5041364 (-)
CI01000016_05052905_05056425 NA coding upstream 39085 5052375 ~ 5056425 (-)
CI01000016_05057407_05062686 NA coding upstream 43936 5057226 ~ 5062770 (-)
CI01000016_05086983_05098757 UBP5, USP5 coding upstream 73523 5086813 ~ 5098757 (-)
CI01000016_05124385_05128589 CDCA3 coding upstream 110969 5124259 ~ 5128975 (-)
G97037 NA non-coding downstream 38993 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 42471 4967002 ~ 4967302 (-)
G97100 NA non-coding downstream 43467 4966094 ~ 4966306 (-)
G97098 NA non-coding downstream 45142 4964408 ~ 4964631 (-)
G97097 NA non-coding downstream 46129 4962586 ~ 4963644 (-)
G97045 NA non-coding upstream 54394 5067684 ~ 5073528 (-)
G97135 NA non-coding upstream 109790 5123080 ~ 5123476 (-)
G97139 NA non-coding upstream 177736 5191026 ~ 5191428 (-)
G97012 NA non-coding upstream 179502 5192792 ~ 5204813 (-)
G97148 NA non-coding upstream 327749 5341039 ~ 5341800 (-)
CI01000016_03921124_03930996 NA other downstream 1078722 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1344460 3647653 ~ 3675585 (-)
G95070 NA other downstream 2024132 2985260 ~ 2985641 (-)
G94786 NA other downstream 2733498 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 312229 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 398969 5412248 ~ 5415906 (-)
G97341 NA other upstream 1145696 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3875543 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3923499 8925960 ~ 8945229 (-)

Expression


Co-expression Network