CI01000016_05037135_05040030


Basic Information

Item Value
gene id CI01000016_05037135_05040030
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5037135 ~ 5041364 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05037135_05040030.mRNA
AGAATCAGAGCAATAATGGTTGAAACTGTTATATTTGTATGTCGCAACTACTGGTTTTAAATTTACTTTTATATTTTATTCATAAGCAGATTTTTTTTTTACCCAAAAAACATCTTACATTTCCAGGATGCAACCACCAATCATTGAGTGCTGCTGGTTAATGATTTCATTAGCCATTGATAAAACAGTGTGCCTGTAAATCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCCCTTTTTTTCAGTATAACATTGCACTTTTTTATACTGAAATTAACCAATTTAAGCCATATCATATGTGCATAAATAGCATTAACCACAAGGCCCATGTAAATATTTAGTATCCCACTCTAATTACGCATTATTTTGAACTATATGTTGTTGAATTTTTAGTGCTTTTAATAAAAATGTAACTGGCTTGAACAAAAAGTCACAAACTGTTCTATGCGGGGTACTATTGTGTACTCAACTTATTTGGCGCAAATTATCCCATGCAGAAGTAATATTTACTAAACATTTACTTAAAAGAAAAAGTACATTTGTTACAAGAAAGTCCTACTTCTTTCATAATAGCTTTATCTTGTATTATTTTATATATAAATTCAATGCTTCATACTATGAATCTTGATGAACTGAATCTAAATAGCCACTTTTTGTTATCAGTGATAAATCAAAAATAAAATAACAGAACATAATTTTAAAACCAAAACTGAAAAAAAAAAAACAAGTTGGAACAATATCATTTCACAGTATATAATTCAATTTTCTTAACTGTGAATTTGTTTGAGCTTGTTTATCTTAAAATAGTCATACTTTACATTTACGTATTTGGCAGACAATTATTCCTAAGTGATTTACATTGCATTTAACATATATATTTCTTGTAACAAATGTACTTTCTCTTTTAAGTAAATGTTTAGTAAATATTACTTCTGCATTGGATAATTTGCACCAATATAGTTGAGTACCCCACATAGAACAGTTTGTGACCTTTTGTTCAAGCCAGTTACATTTTTATTAAAAGTACTAAAAATTCAACAACATATAGTTCAAAATAATGCATTAATGAATTAGCCATGTGGAATATACATTTTCATGCATCCCTTAGGAATCAAACCCATGACCTTGGCATTGCTAATTTAGAAATCTAAATATGAGAAATATAAATAATATTACAAGTTAAAGTCAAACACTAAAGGATTTACAGAGTGCACATTGTAACAAATCAGTCTGCATTTTTCTAGTTTGAATTGTCAATCTCTTCAGAAGGAGTAAAAGGAGAGATTTGTGTGAATCACATGCACAAAAAGAGAAAAAAGCCAAGATCAGATAAAGCAGATATAACACACACCTCACTCCACACCTCACTCCAAGCTCAGCGACACCACCAGCAGCACCATGTGGTGTTCTTTTTTCTGTGTGTAAGCGTGGAGAGATCCGCCTTTCGTGGAACAAGGGAGGAAGAGAGGGGGTGTTTTGGAGGAGGAGCAGAAAGCCCCATAGTAATTTACGCACAGATTGGAGGGACCGTTACCATACCTAGAGATTTATCAGTACAAGCAGAAAATGTTTATGTGAACTGGTTCCGCGGCTCAGATGCAAAACCAGCTATCAGCAGGAACCCTCAGAGTGGGATCCAAATGGGGAAAGATGTTAAAACACAGGTCTCTCTGTCACCGGATTACGATCTCAAAATCTCACCAGTACAGGATTCTGATTTTGAAGTTTGGCGCTGTGAACAACATGTATTAACGTCTACTTACACCAAGACCTACAAACTGTACCGTGATCCGATTTATACCTCTCTCTCCTCATCCTATACAGTCAAAATTCCATGTTCCCTGTCTTCTGATATTCCCTGGTCTGTGTTAAATGAGACAGGCCTCCAGGGTGGTAGCTGGAGCTTCACTCCTCTCAGCAATCAAACCCAGCAGCCTCTCTTTAGACTTAGTGTTGGTCCCGTGGTCAGATGGGATGTCACACCGGGTCAAGATAGCAGGTTCAAGGGAAGAGAGTTAAAAGACAAGGATCTATCTATCGATCTGCCTGTGTCAGAGAAGATCAGGGGGGAGTACAGCTGTAACCTGACATTCAAGAGCAAGACCCTCAGCAGAAAAGTCAAGGTGGAGTTTCTGCAGG

Function

NR:

description
CD4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05037135_05040030.mRNA True 2175 mRNA 0.35 4 5037135 5041364

Neighbor

gene id symbol gene type direction distance location
CI01000016_05011639_05013290 NA coding downstream 23845 5009773 ~ 5013290 (-)
CI01000016_04995532_04996727 NA coding downstream 40408 4994812 ~ 4996727 (-)
CI01000016_04971399_04981029 NA coding downstream 55735 4971342 ~ 4981400 (-)
CI01000016_04936283_04939240 TLR21 coding downstream 97895 4936013 ~ 4939240 (-)
CI01000016_04927541_04930989 PAFAH1B3 coding downstream 106146 4926094 ~ 4930989 (-)
CI01000016_05052905_05056425 NA coding upstream 11011 5052375 ~ 5056425 (-)
CI01000016_05057407_05062686 NA coding upstream 15862 5057226 ~ 5062770 (-)
CI01000016_05086983_05098757 UBP5, USP5 coding upstream 45449 5086813 ~ 5098757 (-)
CI01000016_05124385_05128589 CDCA3 coding upstream 82895 5124259 ~ 5128975 (-)
CI01000016_05131457_05146340 PEX5 coding upstream 89384 5130748 ~ 5146340 (-)
G97037 NA non-coding downstream 66355 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 69833 4967002 ~ 4967302 (-)
G97100 NA non-coding downstream 70829 4966094 ~ 4966306 (-)
G97098 NA non-coding downstream 72504 4964408 ~ 4964631 (-)
G97097 NA non-coding downstream 73491 4962586 ~ 4963644 (-)
G97045 NA non-coding upstream 26320 5067684 ~ 5073528 (-)
G97135 NA non-coding upstream 81716 5123080 ~ 5123476 (-)
G97139 NA non-coding upstream 149662 5191026 ~ 5191428 (-)
G97012 NA non-coding upstream 151428 5192792 ~ 5204813 (-)
G97148 NA non-coding upstream 299675 5341039 ~ 5341800 (-)
CI01000016_04921091_04922518 NA other downstream 113731 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1106084 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1371822 3647653 ~ 3675585 (-)
G95070 NA other downstream 2051494 2985260 ~ 2985641 (-)
G94786 NA other downstream 2760860 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 284155 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 370895 5412248 ~ 5415906 (-)
G97341 NA other upstream 1117622 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3847469 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3895425 8925960 ~ 8945229 (-)

Expression


Co-expression Network