CI01000016_05057407_05062686


Basic Information

Item Value
gene id CI01000016_05057407_05062686
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5057226 ~ 5062770 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05057407_05062686.mRNA
ACTTGCTGTCTTTGTTTTTCTCTACTTGTGCTTTCGCTCATTTCAGCTTTTCTTTATGTTGGCCAGAGGAACTGTCGGTCTGGCATGAATCCATCGGAAGCTTTCCGCTTCCTGGTGGAAGAGAAGATCGTATGCCAGCAGTCACAGAAAGCCAAGTATACCCAACGAGTGGACTACATTGTCCAGCTGCCCGTTCCCATGGATCAGGCAACTAATATGGCTCCAGTGTTGGATGACTCCACAGTGTCTCAGCTGTGTGAGATGGGTTTTCCTCTGGAGGCTTGCCGGAAGGCCGTGTACTACACGGGCAACACTGGCATCGACGCTGCTATGAACTGGGTGATGGGGCACATGGAAGACCCTGGAGGAGTACAAAGGAACCTAGAGAATTCCAGGCCAAGAGAGAGACTGAGGCTTTCTGCTGAGAGATACTACCATCTTCTAGTCCCAATGCTGTTGTTCTTTGTGTATGTTATTTTGCCTATGATTAAAAGGGGGCTCGTAACACCTGGCTCTAGTTCCGCTCCTGGCACAACACCCACGGAGAGTCTACCTGAGGAACACCTAGCAGCCATCATTTCTATGGGCTTCAGTCGAGACCAGGCCACTCGTGCTCTCAGAGCTATGGAGAGTGGTGGAATAAAGTGAACTAGAATAGTATCTTTCTCTCTTTCACCCAGACACACACACACTCACACACTTCTCTATCTGATCTATTGGAAAAAAAAAGTAGGCCCAACTCCTGCTTCTGAACCGGTGCGCCATTTAATAAGTCAAAGCACTTCTCCATCGAATTTATTCACTACCGAGAGAAATCGGACATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05057407_05062686.mRNA True 829 mRNA 0.48 5 5057226 5062770

Neighbor

gene id symbol gene type direction distance location
CI01000016_05052905_05056425 NA coding downstream 801 5052375 ~ 5056425 (-)
CI01000016_05037135_05040030 NA coding downstream 15862 5037135 ~ 5041364 (-)
CI01000016_05011639_05013290 NA coding downstream 43936 5009773 ~ 5013290 (-)
CI01000016_04995532_04996727 NA coding downstream 60499 4994812 ~ 4996727 (-)
CI01000016_04971399_04981029 NA coding downstream 75826 4971342 ~ 4981400 (-)
CI01000016_05086983_05098757 UBP5, USP5 coding upstream 24043 5086813 ~ 5098757 (-)
CI01000016_05124385_05128589 CDCA3 coding upstream 61489 5124259 ~ 5128975 (-)
CI01000016_05131457_05146340 PEX5 coding upstream 67978 5130748 ~ 5146340 (-)
CI01000016_05151082_05166013 CLSTN3 coding upstream 88287 5151057 ~ 5166013 (-)
CI01000016_05170621_05189845 LPCAT3 coding upstream 106944 5169714 ~ 5189845 (-)
G97037 NA non-coding downstream 86446 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 89924 4967002 ~ 4967302 (-)
G97100 NA non-coding downstream 90920 4966094 ~ 4966306 (-)
G97098 NA non-coding downstream 92595 4964408 ~ 4964631 (-)
G97097 NA non-coding downstream 93582 4962586 ~ 4963644 (-)
G97045 NA non-coding upstream 4914 5067684 ~ 5073528 (-)
G97135 NA non-coding upstream 60310 5123080 ~ 5123476 (-)
G97139 NA non-coding upstream 128256 5191026 ~ 5191428 (-)
G97012 NA non-coding upstream 130022 5192792 ~ 5204813 (-)
G97148 NA non-coding upstream 278269 5341039 ~ 5341800 (-)
CI01000016_04921091_04922518 NA other downstream 133822 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1126175 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1391913 3647653 ~ 3675585 (-)
G95070 NA other downstream 2071585 2985260 ~ 2985641 (-)
G94786 NA other downstream 2780951 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 262749 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 349489 5412248 ~ 5415906 (-)
G97341 NA other upstream 1096216 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3826063 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3874019 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G98806 NA non-coding NC_035907.1 CM008310.1 9790968 ~ 9792998 (-)