CI01000016_05086983_05098757 (UBP5, USP5)


Basic Information

Item Value
gene id CI01000016_05086983_05098757
gene name UBP5, USP5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5086813 ~ 5098757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05086983_05098757.mRNA
ATGACGGAGGTTAGCGAGATATTGATGTCGGTTCTGTCTACTATTCGGGTTCCGAGGCCCGGAGATCGTGTTCACAAAGACGAGTGCGCCTTCTCATTTGCCAGCCCGGAGAGTGAGGGAGGCTTGTATGTCTGTATGAACAGCTTTCTCGGCTTTGGAAGCAAGTACGTAGACCGACACCACGCCAAAACCGGCCAGAGAGCTTACCTGCACATCACCAGGACCCGGAAAACACAGAAGGAGGATGAGACCAGTTCTGGATCAGGTGACCCTCCAAAAAAGAAGCCCACAAGACTGGCCATTGGAATTGAGGGAGGGTTTGATGTTGATCAGGAGCAATATGAGGAAGAAGTCAAGGTGGTTCTGTTCCCAGACCGACAGGAAGTGACATCGGAGGATCTAGCCTCCATGCCAGATGTTGTTCGGGAGCGGGTGTCTCTGTCGATGGCGGGGCTGCAGGCAGCAGACTCTGTGTCACACGCTCTGCAGGTGCAACAGTGGGATGGTGAAGTGCGACAGGAATCAAAACACGCAGCTGAACTTAAACAACTCGACAATGGGGTCAAAATCCCTCCGAGTGGTTGGAAGTGTGAGGTCTGTGACCTCCAGGAGAACATCTGGATGAATCTGACAGATGGGAAAGTTTTGTGTGGGCGGAGATATTTTGATGGATCAGGAGGAAATAACCACGCCCTCTTGCACTACCAGCAGACTGGATACCCATTGGCTGTCAAACTTGGCACAATAACACCTGATGGAGCAGATGTCTATTCATATGATGAAGATGATATGGTATTAGATTCTAAGCTTCCAGAGCACCTTTCTCACTTTGGCATTGATATGATGACTATGGAAAAGACGGAAAGAACCATGACTGAGCTGGAGATCGCAGTGAACCAGCGTGTGGGAGAGTGGGAGGTGATTCAGGAGTCGGGCACCACTCTGAGGCCCCTGTGGGGCCCGGGGCTCACCGGTATGAAGAACCTGGGAAACAGCTGCTACCTCAACTCTGTCATGCAAGTGCTCTTCACCATCCCAGACTTCCAGACCAAATACGTTTCTAACATTGACAAGGTCTTTGCTGAGGCGCCCAGTGACCCTACCCAGGACTTTAAGACTCAAGTAGCAAAGCTGGGCTATGGCCTTCTGTCAGGAGAGTACTCTAAGCCGGCCCCGGACCCTGGAGATGACCCCAGTACCTCCACCGAACCCAGGGGTGACCAGGTTGGCATAGCACCTCGCATGTTCAAAGCTCTGGTTGGACGAGGCCACCCTGAGTTCTCGACCAATCGGCAGCAGGATGCACAGGAGTTTCTTCTTCACTTTATAAATATGGTGGAGAGGAACTGTCGGTCTGGCATGAATCCATCAGAAGCTTTCCGCTTCCTGGTGGAAGAGAAGATCGTATGCCAGCAGTCACAAAAAGCCAAGTATACCCAACGAGTGGACTACATTGTCCAGCTGCCCGTTCCCATGGATCAGGCAACCAATATGGACGTGAGCATTGACGTTCCTGATACGCTGGATCTGAGCGCACTTCTTGCCATGGGACAGCAGCCAGGGGAGGAGCTTCTGCCAGAGGTGGCTCCGCCTCCTCTCATGACACCCGATGTGGAGGTTAAAGATTTCTCTGCACCTTTAGTGTTGCCTGGCTCTAGTTCCGCTCCTGGCACAACACCCACGGAGAGTCTACCTGAGGAACACCTAGCAACCATCGTTTCTATGGGCTTCAGTCGAGACCAGGCCACTCGTGCTCTCAGAGCTACGAATAATATTCTAGAGCGTGCGGTGGACTGGATCTTCTCTCATCTGGATGATCTGGAGTCCATGGATGTGTCTGAGGGTGGACGCTCAGAGGGAGGAAGTGAAGCCAGTCGGGAACCTCCTCCAGGACCACGTGTCCGTGATGGACCAGGAAAGTATGAGCTTTTTGCGTTCATCAGTCACATGGGATCGAGCACAATGTGTGGTCATTATGTCTGCCACATCAAGAAGGACCAACAGTGGGTAATCTTTAACGATCAGAAAAATGTTTCTGCAAAATGTTTAATGACAAGTTAATATCACTAAATCACAAAAAAAAAAAAAACAGCTAAATATTATATATTGGAATTTTAAATTTAAAAAATGAATGCAAAAGGTATTGTGCGGTTTCAATTTCTTCCTTATGATTTGTTCTCCTTTTTTGGGGGAGGAAAGAATTCCTTTTGTTCTTTTTGCTTTAAAATAAA

Function

symbol description
usp5 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in negative regulation of viral genome replication. Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation. Located in cytoplasm. Orthologous to human USP5 (ubiquitin specific peptidase 5).
ubp5 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Located in cellular bud neck. Part of incipient cellular bud site. Human ortholog(s) of this gene implicated in ACTH-secreting pituitary adenoma. Orthologous to several human genes including USP32 (ubiquitin specific peptidase 32); USP50 (ubiquitin specific peptidase 50); and USP8 (ubiquitin specific peptidase 8).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05086983_05098757.mRNA True 2231 mRNA 0.50 18 5086813 5098757

Neighbor

gene id symbol gene type direction distance location
CI01000016_05057407_05062686 NA coding downstream 24043 5057226 ~ 5062770 (-)
CI01000016_05052905_05056425 NA coding downstream 30388 5052375 ~ 5056425 (-)
CI01000016_05037135_05040030 NA coding downstream 45449 5037135 ~ 5041364 (-)
CI01000016_05011639_05013290 NA coding downstream 73523 5009773 ~ 5013290 (-)
CI01000016_04995532_04996727 NA coding downstream 90086 4994812 ~ 4996727 (-)
CI01000016_05124385_05128589 CDCA3 coding upstream 25502 5124259 ~ 5128975 (-)
CI01000016_05131457_05146340 PEX5 coding upstream 31991 5130748 ~ 5146340 (-)
CI01000016_05151082_05166013 CLSTN3 coding upstream 52300 5151057 ~ 5166013 (-)
CI01000016_05170621_05189845 LPCAT3 coding upstream 70957 5169714 ~ 5189845 (-)
CI01000016_05205373_05206602 NA coding upstream 106574 5205331 ~ 5206602 (-)
G97045 NA non-coding downstream 13285 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 116033 4969389 ~ 4970780 (-)
G97101 NA non-coding downstream 119511 4967002 ~ 4967302 (-)
G97100 NA non-coding downstream 120507 4966094 ~ 4966306 (-)
G97098 NA non-coding downstream 122182 4964408 ~ 4964631 (-)
G97135 NA non-coding upstream 24323 5123080 ~ 5123476 (-)
G97139 NA non-coding upstream 92269 5191026 ~ 5191428 (-)
G97012 NA non-coding upstream 94035 5192792 ~ 5204813 (-)
G97148 NA non-coding upstream 242282 5341039 ~ 5341800 (-)
CI01000016_05374626_05378364 NA non-coding upstream 246644 5373845 ~ 5386465 (-)
CI01000016_04921091_04922518 NA other downstream 163409 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1155762 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1421500 3647653 ~ 3675585 (-)
G95070 NA other downstream 2101172 2985260 ~ 2985641 (-)
G94786 NA other downstream 2810538 2270836 ~ 2276275 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 226762 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 313502 5412248 ~ 5415906 (-)
G97341 NA other upstream 1060229 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3790076 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3838032 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location