CI01000016_05233964_05243756


Basic Information

Item Value
gene id CI01000016_05233964_05243756
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5233656 ~ 5244368 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05233964_05243756.mRNA
ATTGTCCACTGACATTCAAACAAGCATGCTGTACACCAATTACTAAGAATAACACTGGAATAACATATTTAGGATTTTTGTAAGGTAGGTTACTATTGCTTTGAATCTTTGGCACAGTCTTGTAGCAAGTGCATAAATAACTGATTGTAATGTTATGAAAATGGATAGTGTGGTAAGTGTTTGTTTTTCCTGTATTTCTCTAGTTTTTTTATTTTATTAGATTTGGCAGAACAATTCTAAAAATGTTAACGTAAAATTGTGCTTTGTCTGGTAACATCTAAATTAATTTTATTCTAGTCAAAAATATTGTAAAATTACATCATGATTATGTTACACCAACAAAATTAAAGTTTGTAATCAAAGTTTGTGTAATAATAATTTAAAAAAAAATTGTTACAATCAAAGGATCTTTTTAATTATGAAGATAAAGTATACTGATAGACTAATTGTAAGTAATGTTGAATGAGCTAATGAGGAGGAAAACCTCTTCATCTGCATTTTAAATATTATGCAGAGATTCATAATTAATTTTTGAAAATCACAGTTTACTTGTTTTGGTAATGTGGATTTTTTTCTTGTCAGTCTTTTTGGTCTGACACTCCTCCAGAAACCATGACACCAGCCATCTCCAGAACTGCTGCAGGAGAGATAAATCACTGGTGGAGCCAAATGAAGTTCCGCCTTCAGCATAGAAAAGGATGGAATGAAATGTTGGATGAGACCTTCCTCATGCAGAACAAAAAAGTGAATGACATCCCCCTGTTTTCCGCCACTAAGGAGAACAATGCAGCCTGTATAAGAAAACTGCTTGACTGTTCAACTACAAATATCTTTGAGAGAGGTGAGCTTGGTGAGACGGCTCTGCATGTTGCTGTGATGAATGATAATTTTGAAGCGGCTGTGGCATTAATGGATGGAGCACCTGAGCTCATCAACGAGCCTATGACCTCTGAACTCTACCAAGGTTTAACAGCCCTTCACATTGCTGCAGTTAACCAGAATGTTAACTTAGTCCGGGAGTTGATAACAAGAGGGGGTGATGTGGCAACACCCAGGGTCACAGGCATGTACTTCCGCAAAAGAAGAGGAGGACTTCTGTACTTTGGTGAACACATCCTGGCCTTTGCAAGCTGTGTGGGTAATGAAGAAATTATGTCCATGTTGATAAAAGCTGGGGCAAATATTCGGGCCCAGGATTCCCTGGGTAATACCATCCTGCATCTGTTGGTTTTGCAGCCCAATAAAACAACTGCATGTCAGATTTTTGACATTCTGATGTCACAAGATGCAGATCTGGACCCCACGATGCCTCTAGACATGATTCCCAACTACAGAGGCCTTACTCCATTCAAACTCGCTGCGAAGGAAGGCAACCTTGTGGCCTTCCAGCACTTGGTTAACCGCAGACGGGTTATTCAGTGGAGTTTGGGGCCATTGACCTCCAATCTTTACGACCTCACTGAGATTGACTCCAGGGTGGATGACCTCTCAGTGCTTGAGATTATTGTCAGCAGTCAGAAAAGAGAGGCCAGAAGGATTCTTGAGTTGACTCCAGTGCGACAGCTCGTGAGGCTGAAGTGGAATCTGTATGGGAAACATTACTTCAGGTTATTGATGCTGGTGTACCTGCTGTATATTAGCATATTCACGTTGTGTTGTATAAACCGCCCCCTGAAGGACATTCCTGAGAATTACACCAAAGCAGACAATGACAACACCATAAAACTGCAAAAAAGCTTCACGGAAAGCTATCAGTCCTATAAAGATCACCTGCGTTTAATTGGAGAAATTATAAGTGTCATAGGAGCCATCGTTATTCTGCTGATAGAGATTCCCAGTATTTTGAAAGTGGGGGCTAAACGCTATTTTGGCCAGTCTGCCCTTGGAGGCCCCTTCCATGTCACTCTGGTAAGCTACGCGTGTCTGGTTGTGATTTTGTGTGTGCTGCGCACCACTGGAATAGCAGAAGAGCTTGTGCCGATGGCTTGGGCTCTGGTTCTTGGCTGGTCTAACGTTATGTACTTCGCCCGAGGTTTTGAGATGCTGGGACCTTACGTCATTGTGATTCAGAAGACAATATTTGGAGATATGACAAAGTTCATGTGGTTGTCTCTCATCTTCCTCATTGGATCCGCAACAGGTTTGTGGATCTACTACATGACTCAAGAATCTTTAGCTTTACCGCCATACCGCTCGCTCCCCATCACCATCTTCACTCAATTTGAGCTGAGCATCGGTCTGATAGACTTGCCAGTGGACCACACTCTCTATACACATCCAGTTGTGCACTGTGTTCACATCTACTTCAGCGTGGTCTCTTACATCCTCCTGTTCAACCTCCTGATCGCCATGATGAGCGACACACAGTGGAGGGTCACCCAGGAGCGTGACGAACTCTGGAGGACCCAGGTGGTGGCCACTACTCTGATGCTCGAACGGAGGCTACCACTGCGTCTGTGGCCAAGACTGGGTGTCTGTGGCCTGTCGTTTGGCCTTGGAGAATGCTGGTATCTCCGAGTGGAAGACCGCAATGACCCATTGGTGCAAAAGATGAGGCGTTACGTTACCGCATTCTCAAAGGATGGAGAATCAGCCAAGGAGAAGGAGGAATCAGGCAAGAGTGACACTGGAAATCATCCAGAGCAAAGCAACCAGAATAAAACCTACAGGAGGCCAAGACAATGCTGGCAGATCATTCGCCAGAGTATAGAATGTGAAAAGGAAGAAAATGTGGATTGCCCCGATTTCAAGTATATCTAAAAATGGCTCAAGATCAAGTGGTAATGTTTAGGTGATATGACATTCCTAATATTTAAGGGTTCCTGTTAAATTATTCTGTACTCTTTTAGTGTTTTATAATATGCAAACATATAGGTGTGCACCATCAATATTGTTACATATAAAGGTAGAAGTTTAATTATGAAATACAAAAAGAGACATTTCAAAGAGAATGTATGCGCAATTCAGTACACTATCATGTGAACACTAGGCATTATTAGTGCAAATTAACAAGCTTTGTGCAAATAATCAGTAGAGTTAGACATGAGTGCAGTTGTAATACAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05233964_05243756.mRNA True 3068 mRNA 0.42 16 5233656 5244368

Neighbor

gene id symbol gene type direction distance location
CI01000016_05208242_05218239 NA coding downstream 13840 5207419 ~ 5219816 (-)
CI01000016_05205373_05206602 NA coding downstream 27054 5205331 ~ 5206602 (-)
CI01000016_05170621_05189845 LPCAT3 coding downstream 43811 5169714 ~ 5189845 (-)
CI01000016_05151082_05166013 CLSTN3 coding downstream 67643 5151057 ~ 5166013 (-)
CI01000016_05131457_05146340 PEX5 coding downstream 87316 5130748 ~ 5146340 (-)
CI01000016_05249001_05286683 EPHB6 coding upstream 3192 5247560 ~ 5286683 (-)
CI01000016_05313099_05322439 SLC2A3B coding upstream 68435 5312803 ~ 5322947 (-)
CI01000016_05325805_05330265 COX6B2 coding upstream 81207 5325519 ~ 5332874 (-)
CI01000016_05374626_05378364 NA coding upstream 129477 5373845 ~ 5386465 (-)
CI01000016_05412782_05415867 NA coding upstream 167880 5412248 ~ 5415906 (-)
G97012 NA non-coding downstream 28843 5192792 ~ 5204813 (-)
G97139 NA non-coding downstream 42228 5191026 ~ 5191428 (-)
G97135 NA non-coding downstream 110180 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 160128 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 262876 4969389 ~ 4970780 (-)
G97148 NA non-coding upstream 96671 5341039 ~ 5341800 (-)
G97160 NA non-coding upstream 157775 5402143 ~ 5402369 (-)
G97165 NA non-coding upstream 167287 5411655 ~ 5411920 (-)
G97180 NA non-coding upstream 308927 5553295 ~ 5553986 (-)
CI01000016_04921091_04922518 NA other downstream 310252 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1302605 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1568343 3647653 ~ 3675585 (-)
G95070 NA other downstream 2248015 2985260 ~ 2985641 (-)
G94786 NA other downstream 2957381 2270836 ~ 2276275 (-)
G97341 NA other upstream 914618 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3644465 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3692421 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location