CI01000016_05313099_05322439 (SLC2A3B)


Basic Information

Item Value
gene id CI01000016_05313099_05322439
gene name SLC2A3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5312803 ~ 5322947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_05313099_05322439.mRNA
ATAACCAGCAGATTTGTCTTTAATCAAGAAACTGCGTGAAGCTTTTATAAACTAAAGCAAGATTGATTTTATTCACTGGTAGAATGTTTAAAATGTCAGAGTACAGGAAAGTCATTAAAAAGTGAGTTAACCAATAAAACCACATTTGAGCGATATAGAGAGGGAAGATCTTGAGCTGACAGAGATGCCTCTTATATTTGACTTCCACATTTAGGCTTTGCAATTTGCGTTGCACAATACTAATGCTCAACTGACATCTCAACTCAGCATACATCCGTTGAAGGAAATCAACTTTTTTTGTGGTTTTTCTTAAAGAAGACATAAAAGTTTTTTCATTCCTTCATGTTACTGAAAACAATTGTTCATATACTTCTTTTTTTTTCCACTCTAGAGCCTTTTCCAAATCCAGATTTGTGCTTAACCAAATAAGTTTGGTTTCACTGCAAGAAGAGGAAGAACAAAACCTCTGTCTCAGTTGCAATAACTGGCTTTCGCAACAAAAAGCAGAATGGAGAAGATGAAAGACAGTAAGATGAAGCAGGTGACACACTACCTGGTGTTCTGTGTGTCCACGGCCGTCATCGGCTCGCTGCAGTTCGGCTTCAACACAGGAGTCATCAACGCACCCGATAAGAAAGTGCAGAACTTCATCCGAAACGTGACTCTAGAGCGCACTGGAGAGACCATGAAGGACACCACACTCACAAATGTCTGGGGTATCGCTGTTTCCATTTTCAATGTTGGCGGCATGGTTGGGTCTCTTAGTGTTGGTGCTTTGGTTGACAAACTTGGGAGACGAAAATCAATGCTGCTGTCCAACATCCTGGCTCTGATTGGTGGAAGCCTGATGGGCTTATCCAAAGTCTCCGCCTCCTATGAGCTGATGATAGTGGGCCGCCTGGTGATTGGTGTGTTCTGTGGTCTTTGTACAGGACTGACACCCATGTATGTGGGTGAAATTTCACCAACGGCACTGCGAGGGGCTTTTGGCACCCTTCACCAGCTTGGGGTGGTCATCGGCATCCTGGTTGCACAGATCTTGGGTCTGGAGTCATTGCTGGGGTCTCAGTCTTTGTGGCCATTATTGCTGGCTTTGACGATCCTGCCTGCAGTGTTACAGACTGTTATGCTGATCTTCTGCCCAGAGAGCCCTCGATACCTGCTGATCAGTGTCAACCAGGAGGATGAGGCACGCAAAGTGCTGACACGTCTTCGTGGGCATTCAGATGTGGAGGATGATATTCGTGAGATGAAGGAAGAGGCCATGAAGATGTCCATGGAGAAAAAGGTTTCTATTCCGGAGCTGTTCCGTAACTCCGCCTACAGACAGCCCATTATTATCGCCATAATCCTGCAGCTGTCCCAGCAACTGTCCGGCATCAACGCTGTAATTTATTACTCGACAGAGATCTTCCGAAAAGCCGGTATCACTGAGCCAGTCATTGCCACCATTGGAATGGGTGCAGTCAACACTCTCTTCACTGTCGTCTCTCTCTTCCTGGTGGAGAGGGCAGGGAGAAGAACACTTCATATGATTGGACTGGCTGGAATGACTTTTTGTGTTCTGCTCATGACTATTTCTCTTAAACTTGTGGGAATTTCAGCAGTCAGCGTTGTGGCCATTCTGGCAGTGTTAGGATTTGTGGCCAGTTTTGAGATGGGACCAGGGCCTATCCCATGGTTCATAGTGGCAGAGTTATTCGCTCAGGGTCCACGTCCGGCAGCCATCGCTGTGGCGGGATGCTGCAACTGGACCGCCAGCTTCATTGTCGGACTGTCTTTCCCACCACTATTGGAACTGTGCGGCCCGTATGTGTTTATCATATTCCTCATCCTCCTCATCATCTTCTTCTTGTTTACCTACTTCCGGGTTCCCGAGACCAAAGGCCGGACATTTGAGGACATTGCCAGTGGATTTTCCAATGTCGCAGGGTCCAATGCTGCCAACTACACGTCCCCAGAGGGTGCCGTCACTATGCCAGTGTCCCCATCATCAGACAAGATTCAGATGACTGAGCTGGCTGGACAGGAGAAAAGTGGAACAAACCTATAGAGAAAACCCATAATCTACACACAAGATTGACACCCTAAATGGACAGATGCAGCTAAATAATGGGCATTATTATAAAGGAAATAGCTTGGAGGTATTAGCTTGGATGGTATTGAAAGCCTTTTTATAATTGGCAATTTTAAAGTCATTATGGCGCAAATAAGTGTTACATGTAGTTGCAGATGCATTATGATAAATTGCTGAATGTTTAGTAAGATATAGAGTTTAGTTGTATGTGTAATTGTATGTGTATTCTACTGAGCACTAAGCACTTGTCCATAATCATGTGGAATATTAAA

Function

symbol description
slc2a3b Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human SLC2A3 (solute carrier family 2 member 3).

GO:      GO:0022891, GO:0006810, GO:0005215, GO:0016021, GO:0016020, GO:0022857, GO:0055085

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_05313099_05322439.mRNA True 2349 mRNA 0.45 10 5312803 5322947

Neighbor

gene id symbol gene type direction distance location
CI01000016_05249001_05286683 EPHB6 coding downstream 26120 5247560 ~ 5286683 (-)
CI01000016_05233964_05243756 NA coding downstream 68435 5233656 ~ 5244368 (-)
CI01000016_05208242_05218239 NA coding downstream 92987 5207419 ~ 5219816 (-)
CI01000016_05205373_05206602 NA coding downstream 106201 5205331 ~ 5206602 (-)
CI01000016_05170621_05189845 LPCAT3 coding downstream 122958 5169714 ~ 5189845 (-)
CI01000016_05325805_05330265 COX6B2 coding upstream 2628 5325519 ~ 5332874 (-)
CI01000016_05374626_05378364 NA coding upstream 50898 5373845 ~ 5386465 (-)
CI01000016_05412782_05415867 NA coding upstream 89301 5412248 ~ 5415906 (-)
CI01000016_05426889_05429942 NA coding upstream 102829 5425776 ~ 5429942 (-)
CI01000016_05461674_05464777 FOXJ2 coding upstream 138727 5461674 ~ 5464777 (-)
G97012 NA non-coding downstream 107990 5192792 ~ 5204813 (-)
G97139 NA non-coding downstream 121375 5191026 ~ 5191428 (-)
G97135 NA non-coding downstream 189327 5123080 ~ 5123476 (-)
G97045 NA non-coding downstream 239275 5067684 ~ 5073528 (-)
G97037 NA non-coding downstream 342023 4969389 ~ 4970780 (-)
G97148 NA non-coding upstream 18092 5341039 ~ 5341800 (-)
G97160 NA non-coding upstream 79196 5402143 ~ 5402369 (-)
G97165 NA non-coding upstream 88708 5411655 ~ 5411920 (-)
G97180 NA non-coding upstream 230348 5553295 ~ 5553986 (-)
CI01000016_04921091_04922518 NA other downstream 389399 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 1381752 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 1647490 3647653 ~ 3675585 (-)
G95070 NA other downstream 2327162 2985260 ~ 2985641 (-)
G94786 NA other downstream 3036528 2270836 ~ 2276275 (-)
G97341 NA other upstream 836039 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 3565886 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 3613842 8925960 ~ 8945229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location