CI01000016_08947581_08961131 (ZYX)


Basic Information

Item Value
gene id CI01000016_08947581_08961131
gene name ZYX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8946148 ~ 8961131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08947581_08961131.mRNA
ATCAAGATGTCTGACTCCAGTAGCAGCAAGCCCCTTGTGGTAACTTCCTCCGTCTCCCTCAAAGTTACCGCTCCTTCTTTCTACAACCAGCCCAAAAAGTTTGCATCCGTCGCTCCTCCACGGCCCAAAGTACAGATGGCCCCATCACAGCCCTCATCATTTGCAAGCACTGGTGTGATTGGACGAGTTGGAGAGATGCCCCCGCCCCCTTCAGCTGTTTGTGAGGCCCCGCCCCCAGTTGCAGAAGACCTGCACCTCCCTGCACCTCCCGAGGAGTTTATCTCTGTACCTTCTGCCTCATTCCCCCCACCCCCACCACCACCACCTCCTCCTCTCCCTGAGACCGGTGCAGGTGTCAACTCTCAGAGGCTGTTCGAGAAACAGACAAGTTTTGACAGGCAGCTGGGCTCTTTGACCGATATGTTATCAGAGATGGAAACTAGTGGACCTTTCAATCCAAAGTTGCCAAGCCAGTTTTCATCAGCACCAGCTCCGAAGCCAGTAGCACCACCACCAACCGCCCCTAAGCCCGCCCTTTCCTTTCTGCCCCCTCCTGAGCTGCAGGATCGTCCTCCCCCCGCCCCTTGGGCTGAGGAGCTCCGTGCCCGAACACGGCCGGCCAATCAGAGCACAGCCTCTGCCCCCGCTCCTGTACAGTCACTGGCTAAAGGCCCAGCTGTTGCTCCAAAGACCAACTTCCCTCCCAGTCAGCTGAATTCAAATTTTGGTTCCAAAGCAGTTAGCCCTGCACCTTCTGGAGGCGCAAGAGTGTTTAACCATGCCGTTAAAACCCCCGCCCAAAGCTCTTTCCCACCACCTCCTCCTGCAGCTCCTCCTGCCCCTGTTGCTCCACCAGTGAATATTCCCGCCCCCACACCTGCTTTCAATCACTCTGAAACATCTCCCATTCGCAGTCAGCAGAGCTTTGCTCCGCCTTCTCCTGCTGCACCTAAGAAGTCACCCATCTCATCATTCAGCAGACCAGCAGGAAACACTGTTCCACCAAAGGTGTCTGGTTCTGGTGGAGCTCCTCTCACTATGAGGGAGGTAGAAGAGCTGGAGAAAATGACTAAGGACTTTATCAAAGACATGGACAAGCATCCTCCTGTGATCACCTCTCCAGCTACAGAAGTGTGTGGTAAATGTGGAGAAGCTCTGTCAAGATCTCAGCCAGCAGTAAGAGCGATGGAGAAACTCTTCCACTCCCATTGTTTCTGCTGCATGACCTGCCAGCGCCCCCTGCAGGGCATGCAGTTCTACGACCACAACGGCACGCCTCAGTGTGAGGACTGCTACATGAGTTCTCTGACTGTGTGTTCCCGCTGTGGGGAGCGGATCACAGATCGCGTCCTGAAGGCGGTGGGCCAGTGTTTCCATTCCCACTGTTTCCGCTGCACTACCTGCAGCTGCACACTGGAGGGCGCTCCATTCATCACCGATGACAACAACAACCCCTACTGTGTCAAAGATTACCATCGCCGTTTCTCTCCACTTTGCGTGAGCTGCAATGAGCCGATTGTTCCCGACCCTGGAAGTGAAGAGACCATCAGGGTTGTTGCTTTAGAGAAGAACTTTCACCTGAAGTGCTACCGATGTGAGGATTGTGCTCGTCCCCTTTCCATCGAGGCAGATGCTGATGGCTGCTACCCATTGGATGGCAGAATTCTGTGCATGAAGTGCCACGCCCAACGTGCCAAGCAGGCCAAGCAGTGATTGGTGGAAACTTATACAAAACCTAAACCAAATTTAAGACACATAATTGGCTCAGCTTTGAAAATGTATGTGTTGTAATTCTCTCTTCCGTTTCACATTCTCATTTTCCTCATGTTTCCTCAGTCAGTTAGCCTTTTCTCGACAAAGCTCTGCTGCTTTTTCTGAATGGCCTTATTCAGAGCCCAGCCCATAGCTTGCCCTGTTTGTCCTGGCGTCTTTCTGCTAGGGCCTGATGTGTGCGAGCACAACGTTAGTGCCTCCATGTTGACGGTTACATACGACACAATTTTTACCCCTAGATTGTTTGATATGTAAGGTGTCAGAGAAGTGATTTTAGGATTTTTTTTGTGTCTTGAATTTTTACTGTAGTGGCTGACTCTGTGCAGAGGTAATGTACTGCACTGCCGTTTGAACTGCGCAGTTCAGCGAGACGTACAACTCCCAGCATGCCTTTAAAGAAAAAAAACTCAGAACATCCATAAATTGTACCACAGCTGACTACTGAGGCAAGACGTATAGTTTGTATATCCACAGCCATCCATGCACTTTCAATAAGGCTTTTCTGAAACATACATTGTAGTTGATGATAAGGGCTTTTTGTGAAATTGTAGTCACAACAAATGTAAAATAAGCAAAAACAAAGGCAGGGAAAGATGCATGCTTTACTTATAGAACTGCTTACCTGTAAATGAACAAACATTTTAAAAAGCACATTGGTTTTGTCCTAAAACATGTCGAACAAACTATGTGATGATACAGTTAAAGAAGTTTGAATTGATTATCATGCCAGTATCAGTTCAATTGTTTTTCATTCCATATATTGCCAGAGGTATTTAGCGATTGCACAATTGGTAGATTTGACAATTAAGTATTTCCAAAGAAAAGTACATCAATCACTGAGCCTGAGCCTAAGTCTATGACATCGTAGCTAGAGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGTCTGGATTATGGAGAAGATAGTATTATCTACACAGAAAGCTAAAACTAGAGCCTCCAGGTTATATACAGCAAAATTCAACATCACAAAACTAGTTTTTGATTAAAAAAAACAACAGTGTTACTGTAGACAAACTAACATTCTGAGCAAATTGAACTCTTAAATGTTTCTCAGAAATACTTCATTTTTAACAGTCACCATTCCCCGTGATTAATGCACAGAATTCCAGTTTTCCAACATTGACATTTTAGCTTATTTGTCTTTACAATAGCAACTACTGTCTAACTAAGACCACTCATTTTGGCTTTAGGGTAGCACTCGTATTATTTAGAATATTGCATCTGTTTTGCATAGCTCAGAAACATTCATTTTATCTACGAACCTCTGTGTGTTTCTCTTCTTGGCCTCGTCCCTTGACTATATTATGTCCAAGAAATTCTAGTATTTGATGCAATCGAATAAA

Function

symbol description
zyx Predicted to enable metal ion binding activity. Predicted to be involved in integrin-mediated signaling pathway and transforming growth factor beta receptor signaling pathway. Predicted to be active in cytoplasm; focal adhesion; and stress fiber. Orthologous to human ZYX (zyxin).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06273 ZYX; zyxin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08947581_08961131.mRNA True 3146 mRNA 0.46 9 8946148 8961131

Neighbor

gene id symbol gene type direction distance location
CI01000016_08926089_08945071 NA coding downstream 1077 8925960 ~ 8945229 (-)
CI01000016_08920718_08923668 EMG1 coding downstream 22100 8920465 ~ 8924048 (-)
CI01000016_08906943_08914821 NOP2 coding downstream 31208 8906612 ~ 8914940 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding downstream 51455 8888833 ~ 8894737 (-)
CI01000016_08881761_08888177 GAPDH coding downstream 57911 8881551 ~ 8888237 (-)
CI01000016_09060801_09086358 CLCN1B coding upstream 99391 9060522 ~ 9088199 (-)
CI01000016_09107780_09122244 CASP2 coding upstream 146278 9107409 ~ 9122290 (-)
CI01000016_09129190_09132103 NA coding upstream 166477 9127608 ~ 9132103 (-)
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding upstream 203273 9164404 ~ 9174758 (-)
CI01000016_09185530_09205841 NA coding upstream 224273 9185404 ~ 9206034 (-)
G98658 NA non-coding downstream 20380 8924510 ~ 8925768 (-)
G98672 NA non-coding downstream 29475 8915922 ~ 8916673 (-)
G98715 NA non-coding downstream 74632 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 129259 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 130447 8814845 ~ 8815701 (-)
G98694 NA non-coding upstream 96681 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 140470 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 142092 9103223 ~ 9103458 (-)
G98675 NA non-coding upstream 144263 9105394 ~ 9107226 (-)
G98666 NA non-coding upstream 195538 9156669 ~ 9158272 (-)
G97341 NA other downstream 2786427 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3527931 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3615302 5325519 ~ 5332874 (-)
G98679 NA other upstream 273865 9234996 ~ 9239929 (-)
G98691 NA other upstream 294971 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 548491 9509622 ~ 9512428 (-)
G99178 NA other upstream 853230 9814361 ~ 9814955 (-)
G100190 NA other upstream 1090037 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010586 zyx coding NC_007127.7 CM002900.2 17302452 ~ 17347727 (-)
bowfin (Amia calva) AMCG00004704 NA coding CM030121.1 CM030121.1 56897603 ~ 56910267 (-)
tiger barb (Puntius tetrazona) G81512 NA misc NC_056709.1 CM032078.1 12817753 ~ 13057881 (-)
mexican tetra (Astyanax mexicanus) G89690 zyx,LOC108428910 unknown NC_035906.1 CM008309.1 9894825 ~ 9901700 (-)