CI01000016_09060801_09086358 (CLCN1B)


Basic Information

Item Value
gene id CI01000016_09060801_09086358
gene name CLCN1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9060522 ~ 9088199 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09060801_09086358.mRNA
ATAGTGTGATATGCTCTGTGGAAGAATGTAAAATCTCTATACAGTATGTTCAGGACTGCAGCTACACAAGAGGTGGGTTTGCATTAGTCTCTATTATGGATGCATGTCATAGAGCACATTTTGAAAGTATTACTAATTAGAATGAAAGTGAACAAGAAAGCTTAATTCTTATTATTACTAATTAGTATTACTTTCAGTAATTACTTATTAATAATTAAGATGACATTTACTTTAATAAACACACACGCACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATACACACACACACACATACATACATACACACATACATACACTTAACAGATCATTATTTAATGTACTTATTTAATTATATGTTCATACCATTAGTAATTAATATGTCCTTAGTTATTAATATCCTTGTTTTACCCTGCCATTAACATTGAATGTACTGACTACTGGTTTACTATATAACAATGTTAATAATTAGATTTTTTTTAATCGCTGTCAATTGTTAGTAAAAGAGAATGATTTTAATTTGTGTGCTGAAATTAGTTGAGTTGAAATTAATATACACTACCGTTCAAACGTTTGGGATCGGTACGATTTTTTTAAATGTTTTTAAAATAAGTCTCTTATTCTCATTATTTGACTTAAAAAAACAGTAATATTGTGAAGTATTACAATTTAAAATCACTGTTTTCTATTTGAATATATTATGAAATGTAATTTTTTTTTCTGTGATGTCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGAGTCACATGATCCTTCAGAAATCATTTTAATATGCCGATTTGATGCTCTAGAATCATTTCTGATTATTATCAATATTGAAAACAGTTGTGTACATTTTTTTTTTTTTTTTTTTCAGGATTTTTTGATGAATAGAAAGTTCAAAAGAACAGCATTTATATGAAACCGTTTATATGAACAGTTTATATTATTTATATGAAAAGTTTGGGGTCAGTAAGATTTTTTTTTTTTAAAGAAATTAATACTTTTATTCAGCAAGTATGCATTAAATTGATCAAAAGTAACAATAAATACATTTATAATGTTACAAAATATTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCATCAAATAATCCTGAAAAAAAAATGTTTTTAACATTGGTAATAGTAATAAATGATTCTTGAACAGCAAATCAGCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAATAATGATGCTGAAAATTCAGCTTTACCATCACAGGAATAAATTCTGTTTTAAAATGTATTAAAAGAGAAAACACAGTTATTTTAAATTGTAATAATATTTCACAATATTACTGTTTTTACTGTATGTGTAATCAAATTAATGTAGCATAAGAGACTAATTTTACAAACATAAAAATCTTACCGATCCCAAACGTTTGAATGGCAGTGTAAATTCTGGCCTACATTTTGCTGTCTTATCACAACTTCCAGAAAAGTTCAGAATTTGTTCTTGGGTTTTGCATTTGGAACACTGTATTTTAAATGTAACTTATTTATATAATTTAGTGATCAGGTCTTAATGATAGTATAAATGTTTTGCTGACTGATAAAGCTAATAATTAAATCCCCCAAATTTGTTGGCCATTCATGATGTCATTTATCTTATTTTAATTCTAGCATGCTTTTATTTATTTATATATTTATTTCACACTTTACATATTGAACTAAATACATCAAATACAAACACTGAATATTTTGAGTCATACATACTGTATACATTGAGCATTTCTTGTTTTTGAGTGGGCATGAGGCGGCTGAATCTGATCCCTTCAGTCTCGCACCATGTGGGGTCTGTGCTGCTCGAGAATCTATATGGGGAATATCGGGAGCAGCTGGGTAATGTTGCCAGACGGGAGGCCACACGTCTGTTGACTGAAAGGCAACGGAAGAGGCATGCCGGCAATGCCAAGGCAACCAGGAGAGGCCATGGCCGAGCACATCATGCCAGCCTGGATGTGGGGCCCATGACACCAGGTTTAAGCCCCTCCTCGTCTATAAAGAAGCCACGGCCCTATTCCAAATGCCAGGACTGTTTAGCCCGAATCCAGAGGTATATTGTGACAAAGCTGGGGGAGGACTGGATCTTCTTGGTTCTTTTGGGTCTCACTATGGCTCTGGTTAGCTGGAGCATGGACTATGCCAGTGCCAAGAGTCTACAAGCATATAAGTGGATGTACGGAGAGCTGAAAGGGAATGTGGCTCTGCAGTATCTGGCCTGGGTCTCATATCCTATCATCCTCGTCGTCTTTGCATCCCTCTTCTGCCATTTGGTCGCTCCACAAGCTATAGGCTCTGGGATCCCTGAGCTCAAGACCATCCTCAGAGGTGTGGTGTTAAAGGAGTATCTGACGCTCAAAGCATTTGTGGCTAAAGTCATTGGTCTTACAGCTGGTCTAGGCAGTGGTATGCCCATCGGAAAGGAGGGTCCTTTTGTGCATATTGCCAGTATTTGTGCGGCAGTGCTGAGCAGGGTCATGTCCATCTTCACCGGTGTGTATGAGAAGCTGCTGACCTTAATCGCTGATCTAAGATCAAGTTACCTTTCATTGGCATATAAATTACCACTCCACACCACAGCCATCACAGGTGTGTTGTTCAGTATTGAGGTCACGTCAACATATTTTGCAGTGAGGAATTACTGGAGAGGATATTTTGCTGCCACATTCAGTGCCTTCATTTTCCGAGTGCTGTCAGTGTGGAACAAAGATTCCGTCACGATAACAGCACTGTTTCGTACAAACTTCCGTATGGACTTCCCTTTTGACCTGCAGGAACTGCCAGCTTTTGCAATAATCGGCCGGTTGATTTACCCTGGTGCCGTGACACTAATTATATCCTCCTTCACATTTCCTCCGGGCTTCGGCCAGTTCATGGCTGGAGAGCTGATGCCCAGAGAGTGCATTAATTCACTATTTGATAACTTCACTTGGACAAAGATCTGGGGTTCACCGGCTCCTCCTGGATTGGGTCGCTCTGCTGCTTGGCTCCACCCACAAGTCAGCGTCTTCGTTATCCTCCTCCTCTTCTTTGTCATGAAGTTCTGGATGTCTGCAGTCTCTACAACAATGCCGGTCCCTTCTGGAGCTTTCATGCCTGTTTTTATATTGGGGGCAGCAGCTATGACAGGAGCTGTCACACACACTGTTTCAACTGCAGTGATCTGTTTTGAACTGACGGGTCAAATCTCACACATCCTGCCCATGATGGTGGCCGTGATTCTCGCCAACATGGTGGCACAGGGTCTACAGCCTTCTCTTTATGACTCCATCATTCAGGTCAAAAAGCTGCCCTATCTCCCAGAGCTCGGCATTGGCCACATCAGTAAATATAATATCTTTGTGGAAGACATCATGGTGAAGAAAATAAAGTTTCTATCACCTCAGTCCACTTACAGAGAGCTGAAAGAACTCCTGGAGTCCACGTCTCTCAAAACCATCCCGCTCGTTGACTCCAAAGAGTCAATGATTCTGTTGGGCTCAATTGAGAGATGTGAACTTCAGGCCGCCTTCGATTGGTGGCTCTCAGCCGAGAGGCGGGTTTATACCCGAGGTGAGGGCGTGCCGAGCCCGGGGTCACCGGTCAGCTGGCAGTCCTTCGCCTTCGTGGATGAGGAGGTTGGAGAGGAGAATGGAGACAAGGGTAACACAGTCTCTGAAGAGTGTAACGGCCCACTGGGGTCCTCTAAAACCACAGACATCTCCACTAATCACACCACATCCGGTGCTCTGCAGTCCATGAGGAGGACACTTCATCGTCTTTTCTCCTCATCTTCCTCATCAGGGCAGACTGAGCCAGAGAGCCCTGCAGCTCCTCCTGTAGCTGATAACATGACTCCTGAAGAGATCAAAGCCTGGGAAGAGGAAGAGCTGGATAAGCCGATTGACATTGATCAGATCCGTGTTGACCCCTCACCTTTTCAGCTTGTTGAGAGAACATCTTTGCATAAGACTCACACCCTGTTCTCTCTGCTGGGTCTCAGTCATGCATATGTAACCAGTATTGGTAAACTGATTGGGGTGGTCGCACTAAAAGAGCTCCAGAAAGCAATCGAGGGTTCGACTCGTAGCGGAGTGCGACTGCGTCCCCCTCTGGCCAGTTTCAGAGACGCCAGACGCAAGGCCAAAAAGCCTTCTCATTCCCCTTCCATCCAGTCCTCTCCCACACGGGACAGAGAGCTGTGGAGCGAGGGAGTGAAAAGAGAGACTAAAGACGAGTCAGCTGGTAGTTGTATCCAGACAGCAGAGAAAGAGTGTGATATCGCCATGGGCAACAGCAACAGAAGTACCGTCAGCACCTCTCAGGAGCAATTGCCTTCCCCTTCTTCTTCCACACTTCCTCTGTCCTCTCTTCATTCTGTGCCTGAAGCAGAGGTGGATGCTGATAGAGAGAGTGATGAGGAGCCTTTATAGGTCTATTGTTTTGTAATTTACTCAAATTCAGCCCTCCAGGGGGAGGCAAACCAAATTATGGTGCTGCCTTTGAGCCCAGCATGGGCCGTCGGACTTGTTGGCTGATTTTCTACTCTCTGGACAGGACTCTTTCTTTCTAGATGTTTTTATTCAGTTAAGTTTCTTTTGCTGTCTATTACATTTGTACATATGGACAGTCGGTCTGACACATTTCACTGAATATTGACAATCCATCCCAGTGTTTGTCTGCTGTACTTCATATTATATCTCTGTAAAAAA

Function

symbol description
clcn1b Predicted to enable voltage-gated chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in muscle. Human ortholog(s) of this gene implicated in myotonia congenita. Orthologous to human CLCN1 (chloride voltage-gated channel 1).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05010 CLCN1; chloride channel 1, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09060801_09086358.mRNA True 4784 mRNA 0.41 21 9060522 9088199

Neighbor

gene id symbol gene type direction distance location
CI01000016_08947581_08961131 ZYX coding downstream 99391 8946148 ~ 8961131 (-)
CI01000016_08926089_08945071 NA coding downstream 115451 8925960 ~ 8945229 (-)
CI01000016_08920718_08923668 EMG1 coding downstream 136474 8920465 ~ 8924048 (-)
CI01000016_08906943_08914821 NOP2 coding downstream 145582 8906612 ~ 8914940 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding downstream 165829 8888833 ~ 8894737 (-)
CI01000016_09107780_09122244 CASP2 coding upstream 19210 9107409 ~ 9122290 (-)
CI01000016_09129190_09132103 NA coding upstream 39409 9127608 ~ 9132103 (-)
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding upstream 76205 9164404 ~ 9174758 (-)
CI01000016_09185530_09205841 NA coding upstream 97205 9185404 ~ 9206034 (-)
CI01000016_09212039_09212358 NA coding upstream 123798 9211997 ~ 9213170 (-)
G98694 NA non-coding downstream 2404 9057812 ~ 9058118 (-)
G98658 NA non-coding downstream 134754 8924510 ~ 8925768 (-)
G98672 NA non-coding downstream 143849 8915922 ~ 8916673 (-)
G98715 NA non-coding downstream 189006 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 243633 8816414 ~ 8816889 (-)
G98776 NA non-coding upstream 13402 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 15024 9103223 ~ 9103458 (-)
G98675 NA non-coding upstream 17195 9105394 ~ 9107226 (-)
G98666 NA non-coding upstream 68470 9156669 ~ 9158272 (-)
G98783 NA non-coding upstream 86983 9175182 ~ 9175917 (-)
G97341 NA other downstream 2900801 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3642305 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3729676 5325519 ~ 5332874 (-)
G98679 NA other upstream 146797 9234996 ~ 9239929 (-)
G98691 NA other upstream 167903 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 421423 9509622 ~ 9512428 (-)
G99178 NA other upstream 726162 9814361 ~ 9814955 (-)
G100190 NA other upstream 962969 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G9929 NA non-coding NC_048565.1 CM023219.2 11290488 ~ 11290688 (+)
striped catfish (Pangasianodon hypophthalmus) G10055 NA non-coding NC_047595.1 CM018541.1 18087021 ~ 18087485 (-)