CI01000016_09107780_09122244 (CASP2)


Basic Information

Item Value
gene id CI01000016_09107780_09122244
gene name CASP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9107409 ~ 9122290 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09107780_09122244.mRNA
ATCTATTATGTCTGTCATTTCTTTCTTTTTAATTTAGTGATTCATCATGCTGGGAGAGTGTGGCATGAAAAAATGGGAGAGACTAGCACTCAGGAAGAACTCGGTTACGATTCTGCAGGACTTAGTGGTGGATGATCTTCTGATCCAGTGTCTGCAACAAGATGGAATCCTCACAGACAGCATGGCAGAGAGCATTATGGCTGAATCGACGTCCCAGGGCAAGAGTAGCCATTTATTGCGTCTTTTGCCCAAACGTGGTCCTCGGGCATTTAGCAGCTTCTGTGATGCTCTTAAGGTGACAGAGCAACAGCACCTCTATGAACTGCTTATGGACTTCACAGAGAAAGATAAAAGCTTTTCAGAGCCCTCACTGACTCGCCCGATTCAGGAATGTGTGATACCTGCGAAAAGAGCCAGGACTCATGAGTCAGTGGAGATGTGTTTAGATGCCGACTCTCCCATGACCACAGCTGTACTTCCCTGCACACCGGAATTTTACCAGTCCCACAGATCACAGGCCTACCCGATGCGCTCATGCCCGCGAGGACTGGCCCTGGTGCTGAGTAATGTGAGGTTTGACTCTGCAAACACTGATTTAGACATCCGGAGGGGAGGGGAGGTGGATGAGGAGACGCTGAGGAGACTTTTCACAGAGCTGGATTTCACAGTCAGCCTGCACAAAGACCTAACAGCAGAGGAAATGCGTGGGTGCCTAGAACAGTTTGCCCAGCGGCAGGAGCATGCAGATTATGACTGCGCTGTTGTGTGTTTACTGTCTCATGGTGTTGAGGGATCTATCTACGGGACCGACGGACAGCCGCTGGAGTTGGACTGGGTGTTTGGGGTTTTTGATAACGCCCGCTGCCCTCTGCTCCAGAATAAGCCAAAGATGTTCTTCATTCAGGCTTGTCGAGGAGGCACTGCTGCGATGAGAAACACCAAGAAAGGGTCCTGGTTTATTCAGGAACTGAACACTGCCATCAGACAGAGAGCCAACGACACACACCTGTCAGACATACTTGTGCAGGTGAACGGTCGAATTAAAAGCAGAGAGGGATATGCACCTGGTTCAGCCCATCATCGCTGTAAAGAGATGTCGGAGTTCACCAGCTCCCTCTGTAAAGACCTCTACCTCTTCCCTAAGTACTATCCCAGCAACTAGACACGTGCACGCACTCCCCATGCACAAAGCGCATGCAGAACACACTGTCCTCAGAACTGATTTTGATGCAGTAGCGGGAGCTCAGTGCACACGTGTGTACATCCATCTCCCGCTCTAAGACAAACACAGAGTCATGTAAATCTGCTTAGACCCATTCCATGTGTCATCTGTTTCACATTCCTCAGCACAATGACAGGTTCATTATGATGCGTGTGTACACTATTTACCATGGATTTGCTAAGATCAGTTTTTAATCGTAAGAACTTCATCTTCTAGTGTGCACTAGAAAATATTAAGAGTTCATTCTCCATATCTTTGTTTGCCTTGCTCTTTCTCTTTTTTTTTAATCCATGAAATTAGGAAAGAGTAAA

Function

symbol description
casp2 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage; positive regulation of apoptotic process; and regulation of cysteine-type endopeptidase activity involved in apoptotic process. Predicted to be active in cytoplasm. Is expressed in digestive system; nervous system; and pharyngeal arch. Orthologous to human CASP2 (caspase 2).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02186 CASP2; caspase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09107780_09122244.mRNA True 1533 mRNA 0.48 9 9107409 9122290

Neighbor

gene id symbol gene type direction distance location
CI01000016_09060801_09086358 CLCN1B coding downstream 19210 9060522 ~ 9088199 (-)
CI01000016_08947581_08961131 ZYX coding downstream 146278 8946148 ~ 8961131 (-)
CI01000016_08926089_08945071 NA coding downstream 162338 8925960 ~ 8945229 (-)
CI01000016_08920718_08923668 EMG1 coding downstream 183361 8920465 ~ 8924048 (-)
CI01000016_08906943_08914821 NOP2 coding downstream 192469 8906612 ~ 8914940 (-)
CI01000016_09129190_09132103 NA coding upstream 5318 9127608 ~ 9132103 (-)
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding upstream 42114 9164404 ~ 9174758 (-)
CI01000016_09185530_09205841 NA coding upstream 63114 9185404 ~ 9206034 (-)
CI01000016_09212039_09212358 NA coding upstream 89707 9211997 ~ 9213170 (-)
CI01000016_09224593_09226660 NA coding upstream 102177 9224467 ~ 9226660 (-)
G98675 NA non-coding downstream 183 9105394 ~ 9107226 (-)
G98778 NA non-coding downstream 3951 9103223 ~ 9103458 (-)
G98776 NA non-coding downstream 5596 9101601 ~ 9101813 (-)
G98694 NA non-coding downstream 49291 9057812 ~ 9058118 (-)
G98658 NA non-coding downstream 181641 8924510 ~ 8925768 (-)
G98666 NA non-coding upstream 34379 9156669 ~ 9158272 (-)
G98783 NA non-coding upstream 52892 9175182 ~ 9175917 (-)
G98683 NA non-coding upstream 111614 9233904 ~ 9234433 (-)
G98692 NA non-coding upstream 132661 9254951 ~ 9255328 (-)
G98789 NA non-coding upstream 133345 9255635 ~ 9255882 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 212672 8888833 ~ 8894737 (-)
G97341 NA other downstream 2947688 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3689192 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3776563 5325519 ~ 5332874 (-)
G98679 NA other upstream 112706 9234996 ~ 9239929 (-)
G98691 NA other upstream 133812 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 387332 9509622 ~ 9512428 (-)
G99178 NA other upstream 692071 9814361 ~ 9814955 (-)
G100190 NA other upstream 928878 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location