CI01000016_09164404_09171973 (CCDC106A, CCDC106)


Basic Information

Item Value
gene id CI01000016_09164404_09171973
gene name CCDC106A, CCDC106
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9164404 ~ 9174758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09164404_09171973.mRNA
AGCGTGAGAAATACAAGGTGTGGCGCGTGAGCGTGTGAAATGGTTGAAATGCGTGTATCTCATGGTGAATGCGTGAGACTTGAGAGCCCTGTTCAAAGGGCTTTAAACGATACCAGACGAGGAATAAAGGTCTTATCTAGCGAAACGATCGGTCATTTTCTAAAAAAAAAATACAAATGTATGTGCTTTATAAGCACAAATGATCGCCTTACAAGTGCTTCCGCCAGACCGCCTTCCGTATTCTTAAAAAAGCTTACGCTGAATGTCCTACACCTTCCCTATTCAACTTACGGAACGGACGTGGTACCAGTTCCGTTTTTTCCGTAATTTGAATAGGAAAGGCGTAGGACATACAGCGTAAGCTTTTTTAAGAATACGGAAGGCGGTCTAGCGGAAGCACTTGTAGTGCGATCATTTGTGCTTATAAAGCACATACATTTGTATTTTTTTTAGAAAATGACAGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTAATTTTGACCTTCAACCGTTTGGAGGCCATTGAAGTCCACTATAAGGAGAAGAATCCTGGAATGTTTTCATCAAAAATCTTAATTTCTTTTCGACTTAAGAAAGAAGAACATGGACATCTTAGATGACATGGGGGTGACAGTAGGAATAAAATCTTTGCGTGGCAGGGGGAGCTGCCACTCGACCCGTCACCGCTAGGGGCAGCTGCCACTCGACCTGCCACCGTTATTTGCGCCTGCCACGGGACCTGCCACCGTTATTATTAGGGACTTTAAGCAACAGCTGTTGATGGAACGGCAACGGCGACTGGAAGTAAACTGTCAACTGCCGTAGCTAAAGAACGCAAAAATCGCTAAGCAACAACAAAGAGGACGGCGTGGATCATTTAATCATTTGACATAGTAAACAATACAGTACATGTAAATAAAGCAAGAGAATGGTTGCTTTTGGCATTAAATGACATACAGATACAACTAAACATAACACATAACATTTACTTATCTAACCTGTCACGTATTATCGACTACAGCAAATCGGCTATTCTCCCGTAGTAGACGGTTACAGTAGAACGTCAAGAAGTAGCAGTTAACTTTGCGCATGCGCAACAGAACGCCAGAATGCCGTTGCCGTTGTATCAGCAGCTGCTGCTTAAAGTCCCTAATAATAACGGTGGCAGGTCGAGCGGCAGCTCCCCCTGCCACGCAAAGATTTTACTCCCTCTCGTAAATTATCAGGAAATTTTTATTTGAAAGTGGACTAATCCTTTAATTGACTCTGGTCTGAATGTGTGGTTTTATCATGTTCACTTGTTTACCCAACATATATAGCAAAAATATCTCTGTATTTGAATTTTAGTTTGGAGGACAAAATTTAAATAATAATAATAATAATAATGATTTATTTTTTTAAATTAAAGTTAAGATTAAGTTTTTAAGTTTTGAACTCCTTACCCCTTGAGTCTGACAAGCTACCTTTCTCAATTCTGCAAAGTTTGTCAAGCCAGTAAAGATAATAAAGTAAGACTAGTGAAGATGACAAATGGTAGAAACGCAATGCGCACAGAGCTGGATTTATCGAATCATCTGTCTACATCTGGGCTTGACTCTGCAGTAGTCAGGTTAGTAACCATGGCCATGTCAAAATACTGGGCCTAATGACTAAACTATAGTGAATAATGAGAATACATCATCTGAACCAGTTGTGTGCACTGTGCAAACATCCTAAAATAGTGGATTAATCCATTTTATGCATAAAACGTAATCTTTGTGAAAACATCCCTTGAATGTTGCGTTAACATTTGACAAAGAACATGTAGTACGTGTGCATTTAGGATGGAAGCACCCTGCGTCTGCGAGTTTTTTCCCAATTTCGCAATTTGTGGTGACGTTCATGTGCCTTATGATCTTCCCGCCATAGCCTATATGGGATCAACTAATCCCTTTTGCAGTTCCACCCAATTTTTTAACCAGTTATATAGACCTACTATAACTATACTATATACTATGCTATTACTACTGTGCCTTTTGTGACTTAAAAAAATCTTTAAGGCTTTTATTTTGAACGTGCAGATTTTAAGGTGCGTAATTGTGTCTTCCTTCCCGTTGTTTTTAGTGCTTGCTGCTGAGGGTAATTTACTTGTTATTGTTAGCAAGCTGGTTCTTCCACAAACACACAGACAGATGAAAGTGCACTGACAGACGCTTCAAATACGTGATAGGGAAGCACGTCCACGAGTGAGCAACGGTTTGTACATGTTTTGTGTCATCACGTGACAGAAATACTGCGCTTAATTGTTGATTCTGTCTGGAACGGTCTAGAGATTAGCCAGTTTGCTAGTCATCTTTATGCAGTTAAACAAACGGTGCATTGTACATACACCACTACACTAACCATGAGTAGTATTTTTGATTTTAAGAAGAGTGCAGCCCATGTAATAGCATGTCTTGTTGTTGTTATAAATGTTTTGATTGTGGATGGTTAGTCTTAAAGTGAACGGTAGATACTGACAGTCAGTTTGACTGATTTTTACTATGTTGCGTGCGTGTTTAAGAGAGAAGACTCGGATACTGCTAGTCATCTGACCGCTCGTTAGATAGTTCATGTACCTCATGTATGTGATGTGTCGCCGCACGCGCATCTGCATTAGATGCTCTGCAGAGAAAATTTTTCGAAATAAAACACGTCATGAGTATTTTGGGCTGATAGACGCTCTCTGTGTCTCAACTCAGATCAAAACTGAACAGACGGAAATATGAATGATGCGGATTCAGCCACGAGGAAGCACGCGAGTTCCCGAGAGCTACAGACACCCAAGAATGAGGATGCCTATGAAATCTCCATTCCCTTTGAAGACAACAACTTTGAGCAGCAGGGAGGTTTTTACAATCAAAATGACCAGAACTTTGATGGTAGTGATCCGCCAGCACCGAGCAGCTCGTACCTGTTAATCACTAACTTACGGACACAACTGCAGATCTCACTGGAGAAAAATTCATGGCTGCAGAAGCGCATTGAGGACCTGGAGGAGGAGAGGGACTTCCTGCGCTGCCAGCTCGATCGGTTCATCTTCTCAACCAAGAGTCAGGAAAGCAACGATCAACAAGCAGAGAGCCAGCGGCCAGCAAACCGCCAGTCATTCCAGCAGAGGCCAACCCAACAGACTTCCGCCAATTCCAAGGCCTTGAGCTCTGTTCCTGGTCCAGTCAGTGCTCAGATCAATTCCATGTTTGGACCCCCCCACACTCAGCCTCTCTTACAGGGCCACGAATCCCTCTCTCTTCTGGGAGATGAAGAAGAGGATGACTATCTTGAGGATAGCTACTTGGAGGAAGAGGAAATGATGTCAGGAGAGGATGTGATAACAGACAACATGTCACTTCGGAATATCGGCGCGGCTGGAAGACCCTCCGCCAGTCATCCAGCTCTGAAGAGAAGGAGGGTTTTCAGAATCGCCAGAGGGAGAGAAAGACAGAGAGTGAAAGACGCAGCAGGTGTATTGTTCCGCTATAAAAAGATCCTGGTGACATACCAGAGGCTAAAGAATATGTCCAAGGCCTTCCAGATCCACGGTGTAGATCGTAATACGGTGGCCTCGACCACACCCATTGCTGAGCTTCTGCTGGTGGCTCCAGAGAAGGTGGCCGAGGTGGGTGAGTTTGACCCGTCTAAAGAAAAGCTTCTGGACTACGCCCGACGCTGTTACATCGCCCTCGACCCACAGACTCTCAGCAAAGTGCAAGCTCTGAAGAAGAACAACCTCCTCCTACCCATCTCATACAG

Function

symbol description
ccdc106a Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106).
ccdc106 Located in cytosol and nucleoplasm.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09164404_09171973.mRNA True 3813 mRNA 0.43 6 9164404 9174758

Neighbor

gene id symbol gene type direction distance location
CI01000016_09129190_09132103 NA coding downstream 32301 9127608 ~ 9132103 (-)
CI01000016_09107780_09122244 CASP2 coding downstream 42114 9107409 ~ 9122290 (-)
CI01000016_09060801_09086358 CLCN1B coding downstream 76205 9060522 ~ 9088199 (-)
CI01000016_08947581_08961131 ZYX coding downstream 203273 8946148 ~ 8961131 (-)
CI01000016_08926089_08945071 NA coding downstream 219333 8925960 ~ 8945229 (-)
CI01000016_09185530_09205841 NA coding upstream 10646 9185404 ~ 9206034 (-)
CI01000016_09212039_09212358 NA coding upstream 37239 9211997 ~ 9213170 (-)
CI01000016_09224593_09226660 NA coding upstream 49709 9224467 ~ 9226660 (-)
CI01000016_09251602_09253351 NA coding upstream 76654 9251412 ~ 9253351 (-)
CI01000016_09376209_09382250 TAPBPL coding upstream 201451 9376209 ~ 9382250 (-)
G98666 NA non-coding downstream 6132 9156669 ~ 9158272 (-)
G98675 NA non-coding downstream 57178 9105394 ~ 9107226 (-)
G98778 NA non-coding downstream 60946 9103223 ~ 9103458 (-)
G98776 NA non-coding downstream 62591 9101601 ~ 9101813 (-)
G98694 NA non-coding downstream 106286 9057812 ~ 9058118 (-)
G98783 NA non-coding upstream 424 9175182 ~ 9175917 (-)
G98683 NA non-coding upstream 59146 9233904 ~ 9234433 (-)
G98692 NA non-coding upstream 80193 9254951 ~ 9255328 (-)
G98789 NA non-coding upstream 80877 9255635 ~ 9255882 (-)
G98831 NA non-coding upstream 136233 9310991 ~ 9311210 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 269667 8888833 ~ 8894737 (-)
G97341 NA other downstream 3004683 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3746187 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3833558 5325519 ~ 5332874 (-)
G98679 NA other upstream 60238 9234996 ~ 9239929 (-)
G98691 NA other upstream 81344 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 334864 9509622 ~ 9512428 (-)
G99178 NA other upstream 639603 9814361 ~ 9814955 (-)
G100190 NA other upstream 876410 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010590 ccdc106a coding NC_007127.7 CM002900.2 17639896 ~ 17660594 (-)