CI01000016_09185530_09205841


Basic Information

Item Value
gene id CI01000016_09185530_09205841
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9185404 ~ 9206034 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09185530_09205841.mRNA
ACGCCGTCACTAACAGCACTATTTTCATGTGTTTTTTTGGTACACTCTGAAAACATTTTAAGGTAGTGAAAACAGTGTGATTAAAAAAGGAAGACGATTGGGTCATATAGCAAAGTACAACAGCAAGGCTGGGTGTAGATTCAAATCATAGTAATATTTAAAAAGTCATTCAGAGAACAAGGAGCCCTGAAACATGGATTGTGGCGAAAGTGCTCTTTGTGGAAGTGGAGAACTGGAACTGGATCCAGATATCGTGAGTGAGGAGGCGGGGAAACTCTACTCGGAGCTACAGCGCTATTTGGAGTTGGATGACCAGTTTGAGCAAGAGAGGAGAACAATGCGTGCGAGAGAAAAGGAGAGAGAAAAGAGAGAACGAGAACTGGAGAAGAAAGCCAGAGAACAAGCTGATCAATTGATGGCATTGGAGGAGCAGAAAACAAATCTGACCAGAGAACTAAACTCAATCAAACACACACACAACAAGTTAGTACTGACACATCGAGATCTGCTGGAAAAGAAAAAGGAGTGGGAGAGTGAAGGCTCCACTTTCAGGAATCATGTGCACAGCAAACATTCAGAAGCTGTTTCTACCCAAGGTCAAACTGAAACCACCTGCACTGAAGAGCATGGTCCAAAGGCTGGTGGTGTCCCTGATACCACTGTGTCAGAAATTACTGTTACCAATGACAGCAACATGACCGATGCTGAGGTCAACCATAACAATGATCAATCCTTCATCAGTGACATCATAAGCTCCACCCCTGAGCTGGCCCATTTGAAGGGCTTTGTTGAAACAAGCTCCCCTGTTTGTTCGAAGACAGCGACCTCTGGACTAAACTCTAGTTTGTTTGATGAGATGAAACAAGCCCAGGAGGATAAGAGAGAGGTAGATGAAGACCAGAAGGTGAAAGATGGAGAAAAATCACAGGAGGAGGAAGAGATGGACACCGACTCTGATTGCTTGGAGTGGGAGTTGAGGAATACCGACTCTGTGTTTTCAGAGTTATCTGAACTCAGCAGGGAGTATGTGGAAAACGTCGACCAAGGGGCCAGCGTCAGAGATAGCACAGACCAGTTTGAACAGGTTCTTTCTCAGTATGAGGAACTAAAACACACTCATGAAATGGTGGATGCTGCTCGTAAGGCCCTTATATCCCGTGTTGAAGAGCTGACCAGTGAAAGATCTTCCCTGAATATGGAACTTGCTTCTTGCCGTGAAACCATCACTCGACTGGAAGGGAAAACCAAGGAGATGGAGGAGGAAACCAAGCGGTTACGTAAAGAGCTAGAGACAATCCAGTCAGAGGACCCTGATGCCTCGCTACCTACCTCCCTCCGTCGCTTCTCTCGTTCTGAAATGGCCCGGGTCGTCATGGAGAAAAATCAGTACAAAGAGCGACTGTTTGAACTGCAGGAAACTATGCGACGCTCTCAGACTCTAAGAGTTACCAAAGAAGAGCGCCCTCCTGTTGAAGGGAAGGGTGGTGTCTGGAGCAGGTTTAATCGTTTTCTAGGTTTGACAAAGGGTCAGTTAGCACCAGCCTCAGCTTTAGCATTAACCATCTCTCCCACGCCAGCTCCTGCACAAACACCAGTGGGGTCTCCACAGCAACTCTCCACGAGACCGCCCCCAAAAGAGTTAAGGAAGAGAGAGTTGTACAGGGAGATCCGTTCTCATGTGTGGGGTACTCTGGGTAAAAAACAGCTCCATGGATGGAGCGTGCCTCTCGCTGTTACAAACATTAAGGACTCTGAACCCCCTCCTGAGCCCAAAGACGTGCCCGTCCTCATCCAGCTGAGACTGCTGGACCAGAGAGAAGCTACAGCGAAGTGTTCGGTGTGGGCCGTCACTGGACCTGTTTCCAGCAGTGATGTCACAGTGATTGACCCGGCTCGCTCCAATACCATTCTGGATCAGTTCAGCCTTCCACCCTCATCCCCTGCATTATGCATCTGTGCTGTGCCCCCTACTGGTCAGTCTGAACACTGCAGCTTTGTTTTATTTTACACTGGTTTGAATAGTAGTACTTACTGTAAGTATTATCTTGAGCTGTGTTATTACCCTTTCATGGCATGTCACTTAAAATTCGATTCATATCAGCTGCTCTTGCTGCTGGATATTCTCAGTATTACTGAGTGTTGGCGAGTTGTACTGAACAATGATGTCTTGACTCTTGTGTTAGGAGACACTGCAGGAACTGTGTGGATTGGAACACAGGATGGAGGAGTGCTGATTCATTCATCCTCCAGCTCCAGACGCCGCTGTCTGCAGTCTGTCAGTCTCTCTGAGGGGGTGCACTCTCTGACGTCAGTGTCTTTAGAATCACTGTCATTTATTGTTATCTTTGATAAATCGTTCACAGTGTCTGAGCGAAGTGAGCAGCAGGTGCGTTTTCTGTGCGCAGCAGGAAGTGGAGTTTGGGCTTCCTGCCGATTGGATCCCATTCTTAGGCTTTTTGATTGGACAACTGGCCGCCCACTACAGGAAGTAGATTTATCATCTATAGTGACTAAAGCTTTAGGTTCTGCGTTCCTGTCTCTCTCTCCTCTTCAAATCACAGCCCTGTCTGTGGTCGGTGGGCGGCTGTGGGTAGGCACAGGAAGTGGTGCAATCTTCTCAGCTCGCCTGTCACTCAGTTCAGAGTCCTGCTCTATACCATATTGCTCTCTTGCTTCAGCTCAGCTCTGTTACCATGGCCACCGACAAGCAGTTAAATTCATTATTTCTGCTCCAGGCTGCCGTACTTTCTCAAGTTCAACAGATGGCGCTGCTGCTATCTCTCAGCTCATTCTCAGTGGAGGGGAAGGATATATCAACTTCCGAATTGGAGATGATGGAAGTGATGGGGCCAGTGAGAGTGTCCTACAGAGATCCGAGCGAAGTCACATGATTATTTGGCAGAGCCCCACCCCCTCCGTCCCAAGCCCCGCCCTCTGAAAGCACTTCAGCTGTTGACTCAAACTGTCTTTGAGCGCCATCAGGACATGATCGAGTGCACTACATACTACAGCGCATTACTGTTCTTCTGTCCCCCTTCTATAGACACTCTCAAAGGGAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09185530_09205841.mRNA True 3064 mRNA 0.48 23 9185404 9206034

Neighbor

gene id symbol gene type direction distance location
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding downstream 10646 9164404 ~ 9174758 (-)
CI01000016_09129190_09132103 NA coding downstream 53301 9127608 ~ 9132103 (-)
CI01000016_09107780_09122244 CASP2 coding downstream 63114 9107409 ~ 9122290 (-)
CI01000016_09060801_09086358 CLCN1B coding downstream 97205 9060522 ~ 9088199 (-)
CI01000016_08947581_08961131 ZYX coding downstream 224273 8946148 ~ 8961131 (-)
CI01000016_09212039_09212358 NA coding upstream 5963 9211997 ~ 9213170 (-)
CI01000016_09224593_09226660 NA coding upstream 18433 9224467 ~ 9226660 (-)
CI01000016_09251602_09253351 NA coding upstream 45378 9251412 ~ 9253351 (-)
CI01000016_09376209_09382250 TAPBPL coding upstream 170175 9376209 ~ 9382250 (-)
CI01000016_09384358_09401878 GRHL2A coding upstream 178128 9384162 ~ 9401878 (-)
G98783 NA non-coding downstream 9487 9175182 ~ 9175917 (-)
G98666 NA non-coding downstream 27132 9156669 ~ 9158272 (-)
G98675 NA non-coding downstream 78178 9105394 ~ 9107226 (-)
G98778 NA non-coding downstream 81946 9103223 ~ 9103458 (-)
G98776 NA non-coding downstream 83591 9101601 ~ 9101813 (-)
G98683 NA non-coding upstream 27870 9233904 ~ 9234433 (-)
G98692 NA non-coding upstream 48917 9254951 ~ 9255328 (-)
G98789 NA non-coding upstream 49601 9255635 ~ 9255882 (-)
G98831 NA non-coding upstream 104957 9310991 ~ 9311210 (-)
G98834 NA non-coding upstream 107541 9313575 ~ 9314005 (-)
CI01000016_08926089_08945071 NA other downstream 240175 8925960 ~ 8945229 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 290667 8888833 ~ 8894737 (-)
G97341 NA other downstream 3025683 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3767187 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3854558 5325519 ~ 5332874 (-)
G98679 NA other upstream 28962 9234996 ~ 9239929 (-)
G98691 NA other upstream 50068 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 303588 9509622 ~ 9512428 (-)
G99178 NA other upstream 608327 9814361 ~ 9814955 (-)
G100190 NA other upstream 845134 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015048 NA misc PESF01000042.1 PESF01000042.1 16386 ~ 51010 (-)