CI01000016_09376209_09382250 (TAPBPL)


Basic Information

Item Value
gene id CI01000016_09376209_09382250
gene name TAPBPL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9376209 ~ 9382250 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09376209_09382250.mRNA
GGCTAGAGGGAGCCGATGTGGTCCTGTCCTGCTCACTGATCGAAGAGGGGGGAGGGATGGGAGGCATGATGGGCGGGGCGATGTTCAAGCGCACCCCCTCCACTCTGGTATTCAGGGATCTCGTTGGAAATGCTGATCTTTCACCAGAGCTCGTGACCCCATATAACCCTCCTGAGACCCCTAATGCTGATGATCTAATCTTTGAGTTGATGTTACCATCCATTCAGATTCCTAATGCAGACTTGCTTCTTCATGCTGATTGTAACGAACAGGAAGTGGTTTGTGAGATCAGTCGTTATGTTCCTCGTGGGGCTGATATGGATTCTCTACCTGCTCATTTCATTGGCTCAGTTCAGCTGGTGGGTGGCGGCATCAGCCTCACTCTGGTACTGCAGACCCTTCACAGCGAGACAGCACAATCCGACACACAACCACTTGTGCAGAGTAAACTCAACCTGACTCTCAGCCAATCAGGAACGTTGCTGACAGAGGTTGTGTTTGTGGTGTTCTCGCGCGTCCCATCCATTGTGGCTCCAATAGGGGGTGATGTGCTGTTAGACTGTGGCTTTAGACAGAAGGACTCAGTCCCTGGGCAGGAAGTGACACTAGAGTGGCGCTTACAACACAGAGGAAATGGCCGTAAAATTCTTGATATGAAAGCGAGGGAGGTGGAGACAGACATGGCACCAGATGTATTTGTGGACCGGGAAGACACAAGCGCTGAAGCAGATCTTCTGGTGAGGGATGGTAATGCGTCTCTGACTATGCAGAGGTTAAAGGTCACAGATGAGGGCACATACATCTGCACTGTCGGCTCTGGGGAGTTTCAGACTCAACAGATCGTGCAGCTGCAAATTACACAACCTCCTGATGTCAAACTATCTGAGGAGAAACTGATATTTGAGGATTCGACGCCTCAGAAACTGAGCTGTCATTGTCATCGTTACTACCCTCTGGATGTGCAGGTGGAGTGGTTTTTCCAGGTGCCCTCTGCAGAAGAGCCGGTCTCTTTGACAAAAGAATCCTCCCTCTCCAGCCATCGGCAGCACAGTGATGGAACATATTCCCTCTCCTCTCACCTCACCCTACGGCCCGACACGCACCCACCGGGGACGGTTGTCACCTGTAGGGTCTCTCACACCGCCCTAGAAACACACAGTGAGGTCAGCCTGACTGTGGACAAACCTGAACCAAAAAAAGCCTTCTGGACAATCATCTTCATGTTGGTGATATCAGTGCTGTTTTTGTATCAAGCATTCAGAGGTGCAG

Function

symbol description
tapbpl Predicted to act upstream of or within antigen processing and presentation of endogenous peptide antigen via MHC class I. Predicted to be located in membrane. Orthologous to human TAPBPL (TAP binding protein like).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09376209_09382250.mRNA True 1269 mRNA 0.51 7 9376209 9382250

Neighbor

gene id symbol gene type direction distance location
CI01000016_09251602_09253351 NA coding downstream 122858 9251412 ~ 9253351 (-)
CI01000016_09224593_09226660 NA coding downstream 149549 9224467 ~ 9226660 (-)
CI01000016_09212039_09212358 NA coding downstream 163039 9211997 ~ 9213170 (-)
CI01000016_09185530_09205841 NA coding downstream 170175 9185404 ~ 9206034 (-)
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding downstream 201451 9164404 ~ 9174758 (-)
CI01000016_09384358_09401878 GRHL2A coding upstream 1912 9384162 ~ 9401878 (-)
CI01000016_09410080_09416286 NCALDA, NCALDB, HPCAL1, NCALD.L, NCALD coding upstream 27656 9409906 ~ 9417767 (-)
CI01000016_09475913_09487996 NA coding upstream 92747 9474997 ~ 9488292 (-)
CI01000016_09510177_09512196 ID4 coding upstream 127409 9509622 ~ 9512428 (-)
CI01000016_09638800_09651752 CEP76 coding upstream 256342 9638592 ~ 9651752 (-)
G98808 NA non-coding downstream 30761 9344604 ~ 9345448 (-)
G98838 NA non-coding downstream 49969 9325886 ~ 9326240 (-)
G98809 NA non-coding downstream 50511 9325167 ~ 9325698 (-)
G98802 NA non-coding downstream 51714 9317571 ~ 9324495 (-)
G98834 NA non-coding downstream 62204 9313575 ~ 9314005 (-)
G98878 NA non-coding upstream 98144 9480394 ~ 9480627 (-)
G98885 NA non-coding upstream 107315 9489565 ~ 9489806 (-)
G98887 NA non-coding upstream 111393 9493643 ~ 9493939 (-)
G98898 NA non-coding upstream 131515 9513765 ~ 9513998 (-)
G98691 NA other downstream 118598 9256102 ~ 9257611 (-)
G98679 NA other downstream 136280 9234996 ~ 9239929 (-)
CI01000016_08926089_08945071 NA other downstream 430980 8925960 ~ 8945229 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other downstream 481472 8888833 ~ 8894737 (-)
G97341 NA other downstream 3216488 6158986 ~ 6159721 (-)
G99178 NA other upstream 432111 9814361 ~ 9814955 (-)
G100190 NA other upstream 668918 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location